View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_135 (Length: 284)
Name: NF15941_high_135
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_135 |
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| [»] scaffold0428 (3 HSPs) |
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Alignment Details
Target: scaffold0428 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 11299 - 11553
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11299 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
11398 |
T |
|
| Q |
111 |
ctgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11399 |
ctgcttgcttgattgaatcagtgttgtcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
11498 |
T |
|
| Q |
211 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11499 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
11553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 4713 - 4459
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
4713 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaatataggttatgcttaatgcattttcaaatc |
4614 |
T |
|
| Q |
111 |
ctgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4613 |
ctgcttgcttgattgaatcagtgttgtcaatcgtgtatcgccgaaagtaacaatttcttaccgctacacaatagttttatagcaccactatagatgctat |
4514 |
T |
|
| Q |
211 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4513 |
ttcacaacattttgcactaactatcgtaattctgagcaatagcaatttgttcata |
4459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 12529 - 12625
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||| ||| | ||||||||||||||||| ||| |||||||| |
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| T |
12529 |
cagataacaatgagatcgatgctagtttgagtggacaaagtgatgatttgtctcctgaaggaagcgcgaataaaggttatgctttattaattttcaa |
12625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 33282953 - 33282699
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
33282953 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaatataggttatgcttaatgcattttcaaatc |
33282854 |
T |
|
| Q |
111 |
ctgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
210 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33282853 |
ctgcttgcttgattgaatcagtgttgtcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
33282754 |
T |
|
| Q |
211 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33282753 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
33282699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 33260657 - 33260403
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33260657 |
cagagaacaatgagatcagtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
33260558 |
T |
|
| Q |
111 |
ctgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33260557 |
ctgcttgcttgattgaatcagtgttgtcaatcgtgtatcgccgaaagtaacaatttcttaccgctacacaatagttttatagcaccactatagatgctat |
33260458 |
T |
|
| Q |
211 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttcata |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33260457 |
ttcacaacattttgcactaactatcgtaattctgaacaatagcaatttgttcata |
33260403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 33386409 - 33386162
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||| ||||| |
|
|
| T |
33386409 |
cagagaacaatgagatcgctgctagtttgactggacaaagcggtgatttgtcttctgagaaaatcttgaataaagg-----ctcaattcatttttaaatc |
33386315 |
T |
|
| Q |
111 |
ctgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctat |
210 |
Q |
| |
|
||||||||||| ||||| |||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33386314 |
atgcttgcttgactgaattagtgttgtcattcttgtatcgccgaaagtaacaatttgttaccgctacacaatagttttatagcgccactatagaggctat |
33386215 |
T |
|
| Q |
211 |
ttcacaacattttgcactaactatcgtaattctgaataatagcaatttgttca |
263 |
Q |
| |
|
|||||||||||||| || || |||||||||| |||| |||||||||||||||| |
|
|
| T |
33386214 |
ttcacaacattttgaaccaaatatcgtaattttgaacaatagcaatttgttca |
33386162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 33416990 - 33416873
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatc |
110 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| ||||||| ||||||||| || | ||| || |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
33416990 |
cagagaacaatgagattgatgctaatttgactggacaaaatggtgatttatcccccgaggaaagcttgaataaaggttatgcttcattccttttcaaatt |
33416891 |
T |
|
| Q |
111 |
ctgcttgcttgattgaat |
128 |
Q |
| |
|
|||||| | ||||||||| |
|
|
| T |
33416890 |
ctgctttcctgattgaat |
33416873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 33397455 - 33397353
Alignment:
| Q |
16 |
aacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatcctgct |
115 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||| |||||||||| ||||| || | |||||||||||||||||| ||| |||||||| || |||| |
|
|
| T |
33397455 |
aacaatgagattgatgctagtttgagtggacaaagtgatgatttgtctcctgagggaggcgtgaataaaggttatgctttattaattttcaagtcatgct |
33397356 |
T |
|
| Q |
116 |
tgc |
118 |
Q |
| |
|
||| |
|
|
| T |
33397355 |
tgc |
33397353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 33281723 - 33281627
Alignment:
| Q |
11 |
cagagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaa |
107 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||| ||| | ||||||||||||||||| ||| |||||||| |
|
|
| T |
33281723 |
cagataacaatgagatcgatgctagtttgagtggacaaagtgatgatttgtctcctgaaggaagcgcgaataaaggttatgctttattaattttcaa |
33281627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 33408366 - 33408265
Alignment:
| Q |
16 |
aacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatcctgct |
115 |
Q |
| |
|
||||||||||| | |||||||||| | |||||||||||||||| ||| ||||| | | | ||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
33408366 |
aacaatgagattgatgctagtttggccggacaaagtggtgattcatctcctgagggcagcatgaataaaggttatgctctattaattttcaagtcctgct |
33408267 |
T |
|
| Q |
116 |
tg |
117 |
Q |
| |
|
|| |
|
|
| T |
33408266 |
tg |
33408265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 2733032 - 2732973
Alignment:
| Q |
171 |
ccgctacacaatagttttatagcgccactatagatgctatttcacaacattttgcactaa |
230 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||| |||||||| ||||||||||| ||||| |
|
|
| T |
2733032 |
ccgctatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaa |
2732973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 17442776 - 17443026
Alignment:
| Q |
12 |
agagaacaatgagatcggtgctagtttgacaggacaaagtggtgatttgtcttctgagagaatcttgaataaaggttatgcttaattcattttcaaatcc |
111 |
Q |
| |
|
|||||||||| |||| | ||||||||||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
17442776 |
agagaacaataagattgatgctagtttgagtggacaaagtgatgatttgtctcctgagagaagcttgaattaaagttatgcttaattcattttccaatcc |
17442875 |
T |
|
| Q |
112 |
tgcttgcttgattgaatcagtgttttcaatcgtgtatcgctgaaagtaacaatttcttaccgctacacaatagttttatagcgccactatagatgctatt |
211 |
Q |
| |
|
||||| |||| ||||||||||||| |||||| |||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17442876 |
tgctttcttgtttgaatcagtgttgtcaatcatgtatccctgaaagtaactgtttgtt-ccttcacacaatagttttatagcgccactatagatgctatt |
17442974 |
T |
|
| Q |
212 |
tcacaacattttgcactaactatcgtaattctgaataatagcaatttgttca |
263 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
17442975 |
tcacaacattttgcactaaatatcgtaattctgaacaatagcaatttgttca |
17443026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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