View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_14 (Length: 552)
Name: NF15941_high_14
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 40846290 - 40846822
Alignment:
| Q |
1 |
gaaaattcaaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaaggttctagt |
100 |
Q |
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| T |
40846290 |
gaaaattcaaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgatcccaaggttctaat |
40846389 |
T |
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| Q |
101 |
gaaagtgtctcatttaatttgtttaacaatgcggtgtatttgatggagtgtaacaacctcaatttaaagttctttgaagatgcattatggaaatctgtta |
200 |
Q |
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| T |
40846390 |
gaaagtgtctcatttaatttggttaacgatgcggtgtatttgatggagtgtaacaacctcaatttaaagttctttgaagatgcattatggaaatctgtta |
40846489 |
T |
|
| Q |
201 |
tatgttgcagggtatttctcgtgttagtgttgaggaaggcactgtcttcacattgaactgtatgatggtcttagagctactttgcacatcttgtgctagt |
300 |
Q |
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| T |
40846490 |
tatgttgcagggtatttctcgtgttagtgttgaggaaggcactgtcttcacattgaactgtgtgatggtcttagagctactttgcacatcttgtgctagt |
40846589 |
T |
|
| Q |
301 |
ttagtctctttcaataaaaattatgcttataaaaataaagtcaatggtttgaagaagttgtaatctagactgtgtaataattatatccaacagcttnnnn |
400 |
Q |
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| T |
40846590 |
ttagtctctttcaataaaaattatgcttataaaaataaagtcaatggtttgaagaagttgtaatctagac--tgtaataat--tatccaacagcttaaaa |
40846685 |
T |
|
| Q |
401 |
nnnncaacgcaactttataatcttgtcagctgattcgttttacctgcattgttaggtttgcactttgcagcagtaagttacaatccaatattggttgctc |
500 |
Q |
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| T |
40846686 |
aaaacaacgcaactttataatcttgtcagctgattcgttttacctgcattgttaggtttgcactttgcagtagtaagttacaagccaatattggttgctc |
40846785 |
T |
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| Q |
501 |
agttctaaggtactatcgaaggaaaaggacttcaaga |
537 |
Q |
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| T |
40846786 |
agttctaaggtactatcgaaggaaaaggacttcaaga |
40846822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 4890640 - 4890548
Alignment:
| Q |
12 |
catatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaaggttctagtgaaa |
104 |
Q |
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| T |
4890640 |
catatgtgtgggaaaaggagcatgtttgtagagcttgatgaatcagtgtgtggcaatgtctcatttggcgatgattccaagattccagtgaaa |
4890548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 34645979 - 34646063
Alignment:
| Q |
8 |
caaccatatgtgtgaaaaaaggagaatgtttgtggagcttgatgaatcagtaagtggcaatgtctcatttggcgatgattccaag |
92 |
Q |
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| T |
34645979 |
caaccatatgtgtggaaataggagcatgttcgtaaaacttgatgaatcattaagtggaattgtctcatttgtcgacgattccaag |
34646063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 21745796 - 21745757
Alignment:
| Q |
40 |
tggagcttgatgaatcagtaagtggcaatgtctcatttgg |
79 |
Q |
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| T |
21745796 |
tggatcttgatgaatcagtaagtgacaatgtctcatttgg |
21745757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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