View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_141 (Length: 277)
Name: NF15941_high_141
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_141 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 18418111 - 18418223
Alignment:
| Q |
148 |
ctcttgataatagacaactggttctgagaaataaaacaaccaggatgaaaccaagagacacaaaaagatgcatgtatatataggaaacaaacttacttgg |
247 |
Q |
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| T |
18418111 |
ctcttgataatagacaattggttctgagaaataaaacaaccaggatgaaaccaagagacacaaaaagatgcatgtatatataggaaacaaacttacttgg |
18418210 |
T |
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| Q |
248 |
gataccactctac |
260 |
Q |
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||||||||||||| |
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| T |
18418211 |
gataccactctac |
18418223 |
T |
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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 21005929 - 21006040
Alignment:
| Q |
149 |
tcttgataatagacaactggttctgagaaataaaacaaccaggatgaaaccaagagacacaaaaagatgcatgtatatataggaaacaaacttacttggg |
248 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
21005929 |
tcttgataatagacaattggttatgagaaataaaacaaccaggatgaaaccaacagaaacaaaaacatgcatgtatatataggaaacaaacttaattggg |
21006028 |
T |
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| Q |
249 |
ataccactctac |
260 |
Q |
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|||||| ||||| |
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| T |
21006029 |
ataccattctac |
21006040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 50232714 - 50232825
Alignment:
| Q |
149 |
tcttgataatagacaactggttctgagaaataaaacaaccaggatgaaaccaagagacacaaaaagatgcatgtatatataggaaacaaacttacttggg |
248 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
50232714 |
tcttgataatagacaattggttatgagaaataaaacaaccaggatgaaaccaagagaaacaaaaacatgcatgtatatatagaaaacaaacttaattggg |
50232813 |
T |
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| Q |
249 |
ataccactctac |
260 |
Q |
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|||||| ||||| |
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| T |
50232814 |
ataccattctac |
50232825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 11376 - 11310
Alignment:
| Q |
12 |
aacctgtgcaccaaaccatcacattagaaccttcacaaagccttctagcaagaaccattcgattgaaa |
79 |
Q |
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| T |
11376 |
aaccggtgcaccaa-ccatcacattagaaccttcacaaagccttctagcaagaaccattcgattgaaa |
11310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 32793026 - 32793062
Alignment:
| Q |
224 |
tatataggaaacaaacttacttgggataccactctac |
260 |
Q |
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| T |
32793026 |
tatataggaaacaaacttaattgggataccattctac |
32793062 |
T |
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