View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_145 (Length: 268)
Name: NF15941_high_145
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_145 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 4931229 - 4931463
Alignment:
| Q |
13 |
aaaatctatcagcgagaatagctgcaactaattaataaaactacatttgttacaacatcgaagtggtgatcatttgcataggcatgaacaatcttgtttc |
112 |
Q |
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| T |
4931229 |
aaaatctatcagcgagaatagctgcaactaattaataaaactacatttgttacaacatcgaaatggtgatcaattgcataggcatgaacaatcttgtttc |
4931328 |
T |
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| Q |
113 |
ctaagcatcgacattagagctaaagtataagcttcaccactattgtaaatatcatgatagagtacaaccatatattagttgttcagttgtcctcttttca |
212 |
Q |
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| T |
4931329 |
ctaagcttcgacattaatgctagagtataagcttcacaactgttgtaaatatcatgatagagtacaaccatatattagttgttgagctgtcctctt---- |
4931424 |
T |
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| Q |
213 |
ttcactatgacagcttttaaataccatgatagaaattgt |
251 |
Q |
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| T |
4931425 |
ttcactatgccagcttttaaatatcatggtataaattgt |
4931463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 4918869 - 4918927
Alignment:
| Q |
60 |
tgttacaacatcgaagtggtgatcatttgcataggcatgaacaatcttgtttcctaagc |
118 |
Q |
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| T |
4918869 |
tgttacaacatcaatgtgctgataatctgcataggcattgacaatcttgtttcctaagc |
4918927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 28295631 - 28295754
Alignment:
| Q |
87 |
tgcataggcatgaacaatcttgtttcctaagcatcgacattagagctaaagtataagcttcaccactattgtaaatatcatgatagagtacaaccatata |
186 |
Q |
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| T |
28295631 |
tgcataggcacggacaatcttgtttctcgagcttctgcagtaaagccagagtataagcttcaccacagttgcaaatatcatgatagagtacaacc--ata |
28295728 |
T |
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| Q |
187 |
ttagttgttcagttgtcctcttttca |
212 |
Q |
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| T |
28295729 |
ttagttgttcagatgtcatcttttca |
28295754 |
T |
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