View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_148 (Length: 265)
Name: NF15941_high_148
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_148 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 37045106 - 37045347
Alignment:
| Q |
9 |
agcagagagtgtgtttattaatgtttttctgccacttaaaaagaatgtggcagaaaaagaacaaaatagtttgtttgtttggcatgttgggagacaaaaa |
108 |
Q |
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| T |
37045106 |
agcagagagtgtgtttattaatgtttttctgccacttaaaaagaatgtggcagaaaaagaacaacatagtttgtttgtttggtatgttgggagacaaaaa |
37045205 |
T |
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| Q |
109 |
taatttgttgtttcatggaggga--acacaaagcattaaacaaggataaatcattaattaaaagtgttctagagtgagagatgtttaaacatgaaccgtt |
206 |
Q |
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| T |
37045206 |
taatttattgtttcatggagggaacacacagagcattagacaaggataaatcattaattaaaagtgttccagagtgagagatgtttaaacaagaatcgtt |
37045305 |
T |
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| Q |
207 |
gcccatgaatagcgagtcaggacccatgtagggatgatgtat |
248 |
Q |
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| T |
37045306 |
gcccatgaatagcgagtcaggacccgtgtagggatgatgtat |
37045347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 7963103 - 7962899
Alignment:
| Q |
45 |
taaaaagaatgtggcagaaaaagaacaaaatagtttgtttgtttggcatgttgggagacaaaaataatttgttgtttcatggagggaac--acaaagcat |
142 |
Q |
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| T |
7963103 |
taaaaggaatgtggcagaaaaagaacagcaaagttcgtttgtttgataagttgggagacataaataattttttgtttcatagagggaacgcacaaaacat |
7963004 |
T |
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| Q |
143 |
taaacaaggataaatcattaattaaaagtgttctagagtgagagat--gtttaaacatgaaccgttgcccatgaatagcgagtcaggacccatgtaggga |
240 |
Q |
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| T |
7963003 |
tagacaaggataaatcattaattaaaagtgttctagagtgagagatgagtttaaacctgaaccgttgaccatgaacaatgagtcaggacccgtgtatgga |
7962904 |
T |
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| Q |
241 |
tgatg |
245 |
Q |
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| T |
7962903 |
tgatg |
7962899 |
T |
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