View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_154 (Length: 259)
Name: NF15941_high_154
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_154 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 37790550 - 37790406
Alignment:
| Q |
13 |
cagagacaatttttgtgggtccaatttaatcataattaaactatataggtaatcacggatagatccagcataatcatcacggattagccaaaatgaaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790550 |
cagagacaatttttgtgggtccaatttaatcataattaaactatataggtaatcacggatagatccagcataatcatcacggattagccaaaatgaaata |
37790451 |
T |
|
| Q |
113 |
atttaaatttgtcacgggttcatgttaaaatactcttattatatt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790450 |
atttaaatttgtcacgggttcatgttaaaatactcttattatatt |
37790406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 37790420 - 37790349
Alignment:
| Q |
169 |
tactcttattatattatcatcatccctaaaggaaaggtagtgatcacgtagtcgatagggagcataggaatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790420 |
tactcttattatattatcatcatccctaaaggaaaggtagtgatcacgtagtcgatagggagcataggaatg |
37790349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 3925819 - 3925861
Alignment:
| Q |
68 |
cggatagatccagcataatcatcacggattagccaaaatgaaa |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3925819 |
cggatagatccaccataatcatcacggattagccaaaatgaaa |
3925861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University