View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_166 (Length: 253)
Name: NF15941_high_166
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_166 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 40242335 - 40242095
Alignment:
| Q |
10 |
aataatatcaatcatatttaaggtatatttggaagaaaaagatcaaatatgttgagtttcaaatacacccaaaaattcagnnnnnnnntgaacatattaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
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| T |
40242335 |
aataatatcaatcatatttaaggtatatttggaagaaaaagatcaaatatgttgagtttcaaatacacccaaaaattcagaaaaaaatt-aacatgttaa |
40242237 |
T |
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| Q |
110 |
acaaactaaatcttttggaatgcatgaaatatccaaaattgaa-tttgctcatttcctattatgcactcaaggtggtgaaaaataattaggtcatctcct |
208 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||| |||| |
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| T |
40242236 |
acaaactaaattttttggaatggatgaaatatccaaaattgaaatttgctcatttcctat---gcactcaaggtggtgaaaaataatttgctcatatcct |
40242140 |
T |
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| Q |
209 |
tttaatattattttttaaaaagaataaattaaacaacccaatatc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40242139 |
tttaatattattttttaaaaagaataaattaaacaacccaatatc |
40242095 |
T |
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