View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_169 (Length: 251)
Name: NF15941_high_169
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_169 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 6734720 - 6734967
Alignment:
| Q |
1 |
tacagcaaagcctacagcgaaagagccttcgttttctttcttcatgcatgatatccttggtggatcacatccatcagcaagagtagtagcaggaattgta |
100 |
Q |
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| T |
6734720 |
tacagcaaagcctatagcaaaagagccgtcgttttctttcttcatgcatgatatccttggtggatcacatccatcagcaagagtggtagcaggaattgta |
6734819 |
T |
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| Q |
101 |
gcaaacagtgatgtaaccggcttaccattctccaagctcaacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggca |
200 |
Q |
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| T |
6734820 |
gcaaacagtgatgtaaccggcttaccattctccaagctcaacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggca |
6734919 |
T |
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| Q |
201 |
ttgtcacaaacaacaatctcccaaaccttgtaggtctctgtgctgctc |
248 |
Q |
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| T |
6734920 |
ttgtcacaaacaacaatctcccaaaccttgtaggtctcagtgctgctc |
6734967 |
T |
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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 52200288 - 52200110
Alignment:
| Q |
38 |
ttcttcatgcatgatatccttggtggatcacatccatcagcaagagtagtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagc |
137 |
Q |
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||||||||||||||||| || ||||| ||||| |||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
52200288 |
ttcttcatgcatgatatactaggtgggtcacacccatcagcaagagtagtaaccggaatagtagcaaacagtgatgtaacaggcttacccttctccaaaa |
52200189 |
T |
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| Q |
138 |
tcaacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaa |
216 |
Q |
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||||||||| ||||||| || || |||||||| || ||||| | ||| || ||||||||||| ||||||||||||| |
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| T |
52200188 |
acaacaacaacatcttcccaatcacaggaggaatacccttagtcatccccaagctcaatggcatcatcacaaacaacaa |
52200110 |
T |
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