View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_170 (Length: 250)
Name: NF15941_high_170
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_170 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28092521 - 28092280
Alignment:
| Q |
1 |
atatattagtggcaaagaaataaatgtatttcgatatttgtattctaaagtcaatcaannnnnnnctttgatatcaaaatcaatcattttgaatcaaaga |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28092521 |
atatattagtggcaaagaaataaacgtatttcggtatttgtattctaaagtcaatcaatttttttctttgatatcaaaatcaatcattttgaatcaaaga |
28092422 |
T |
|
| Q |
101 |
aaaaatgcaaaagtgataattattacgagagagtaacataattaagttcgtttgtaaagaagtccagagtgagtatataatatatgaataacagagttaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28092421 |
aaaaatgcaaaagtgataattattatgagagagtaacataattaagttcgtttgtaaagaagtccagagtgagtatataatatatgaataacagagttaa |
28092322 |
T |
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| Q |
201 |
tggaatgatttaaatgaagtgctctataatgtatcctttgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28092321 |
tggaatgatttaaatgaagtgctctataatgtatcctttgct |
28092280 |
T |
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