View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_176 (Length: 243)

Name: NF15941_high_176
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_176
NF15941_high_176
[»] chr5 (25 HSPs)
chr5 (1-225)||(13700714-13700938)
chr5 (123-222)||(95393-95492)
chr5 (123-222)||(9368688-9368787)
chr5 (123-191)||(15480415-15480483)
chr5 (123-191)||(17150391-17150459)
chr5 (123-203)||(18333610-18333690)
chr5 (122-222)||(32908844-32908944)
chr5 (133-222)||(24269997-24270086)
chr5 (133-222)||(24346628-24346717)
chr5 (125-209)||(6413562-6413646)
chr5 (123-222)||(43117740-43117839)
chr5 (123-225)||(17352558-17352659)
chr5 (125-222)||(6919321-6919418)
chr5 (123-220)||(25258195-25258292)
chr5 (123-220)||(25321985-25322082)
chr5 (133-222)||(41666884-41666973)
chr5 (127-203)||(11896302-11896378)
chr5 (123-222)||(8081241-8081340)
chr5 (131-222)||(15590039-15590130)
chr5 (152-220)||(33337367-33337435)
chr5 (155-222)||(17016002-17016069)
chr5 (123-165)||(2063683-2063725)
chr5 (123-197)||(8098410-8098484)
chr5 (123-197)||(29909638-29909712)
chr5 (123-203)||(20510788-20510867)
[»] scaffold0055 (7 HSPs)
scaffold0055 (1-122)||(4116-4237)
scaffold0055 (1-122)||(42284-42405)
scaffold0055 (1-122)||(51532-51653)
scaffold0055 (1-122)||(67067-67188)
scaffold0055 (1-122)||(69987-70108)
scaffold0055 (1-122)||(32976-33097)
scaffold0055 (1-60)||(80533-80592)
[»] scaffold0052 (8 HSPs)
scaffold0052 (1-122)||(6887-7008)
scaffold0052 (1-122)||(26057-26178)
scaffold0052 (1-122)||(27831-27952)
scaffold0052 (1-122)||(48439-48560)
scaffold0052 (1-122)||(51031-51152)
scaffold0052 (1-122)||(80298-80419)
scaffold0052 (1-122)||(62968-63089)
scaffold0052 (1-122)||(18559-18680)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-122)||(46701-46822)
[»] chr7 (34 HSPs)
chr7 (123-222)||(25620229-25620328)
chr7 (123-222)||(31892245-31892344)
chr7 (123-222)||(33834284-33834383)
chr7 (123-203)||(21861387-21861467)
chr7 (123-222)||(1596686-1596785)
chr7 (123-222)||(2404300-2404399)
chr7 (123-222)||(36277118-36277217)
chr7 (123-219)||(48661450-48661546)
chr7 (123-203)||(20305383-20305467)
chr7 (123-222)||(22574694-22574793)
chr7 (123-222)||(29469698-29469797)
chr7 (123-213)||(44874479-44874569)
chr7 (137-222)||(33996206-33996291)
chr7 (123-191)||(4507025-4507093)
chr7 (151-222)||(3519852-3519923)
chr7 (123-222)||(3519931-3520030)
chr7 (133-222)||(2315153-2315242)
chr7 (123-220)||(18826382-18826479)
chr7 (123-203)||(28080757-28080838)
chr7 (123-199)||(36993223-36993299)
chr7 (123-222)||(31485551-31485650)
chr7 (134-220)||(1936242-1936327)
chr7 (134-211)||(5871858-5871935)
chr7 (128-203)||(4886427-4886502)
chr7 (123-169)||(9689045-9689091)
chr7 (123-191)||(32278994-32279062)
chr7 (123-197)||(26561990-26562064)
chr7 (123-172)||(10903178-10903227)
chr7 (133-174)||(26239855-26239896)
chr7 (134-222)||(5871703-5871791)
chr7 (123-171)||(21821899-21821947)
chr7 (142-190)||(30727278-30727326)
chr7 (143-179)||(39164556-39164592)
chr7 (142-222)||(40746159-40746239)
[»] chr4 (31 HSPs)
chr4 (123-222)||(28245653-28245752)
chr4 (123-203)||(22231219-22231299)
chr4 (123-222)||(4645735-4645834)
chr4 (128-222)||(5398337-5398431)
chr4 (133-222)||(35788763-35788852)
chr4 (123-191)||(36686064-36686132)
chr4 (123-222)||(6218297-6218396)
chr4 (123-222)||(35796869-35796968)
chr4 (134-203)||(35819039-35819108)
chr4 (130-222)||(33107971-33108063)
chr4 (133-191)||(12005632-12005690)
chr4 (148-222)||(50543457-50543531)
chr4 (133-190)||(25324193-25324250)
chr4 (123-191)||(40717364-40717432)
chr4 (140-203)||(5398621-5398684)
chr4 (123-180)||(7926421-7926478)
chr4 (134-187)||(11036673-11036726)
chr4 (123-222)||(27634208-27634307)
chr4 (123-210)||(35645304-35645391)
chr4 (123-210)||(35645593-35645680)
chr4 (130-172)||(4464396-4464438)
chr4 (123-169)||(13555422-13555468)
chr4 (142-191)||(26549536-26549585)
chr4 (123-172)||(30530104-30530153)
chr4 (122-222)||(21646394-21646493)
chr4 (123-178)||(34357966-34358021)
chr4 (137-190)||(6666743-6666796)
chr4 (152-205)||(6778587-6778640)
chr4 (141-214)||(13495591-13495664)
chr4 (136-197)||(40716537-40716598)
chr4 (123-211)||(22445545-22445633)
[»] chr1 (34 HSPs)
chr1 (123-222)||(25713251-25713350)
chr1 (123-222)||(4098295-4098394)
chr1 (123-202)||(30369928-30370007)
chr1 (122-222)||(2859519-2859619)
chr1 (134-222)||(12376565-12376652)
chr1 (123-191)||(52961440-52961508)
chr1 (123-210)||(51460346-51460433)
chr1 (125-191)||(16163028-16163094)
chr1 (130-222)||(7307821-7307913)
chr1 (123-203)||(35772122-35772202)
chr1 (123-222)||(4112667-4112766)
chr1 (123-203)||(26177001-26177081)
chr1 (123-227)||(38668218-38668322)
chr1 (133-222)||(39348244-39348333)
chr1 (123-200)||(40524789-40524866)
chr1 (123-222)||(27413440-27413539)
chr1 (124-222)||(4112898-4112996)
chr1 (133-191)||(33156837-33156895)
chr1 (134-222)||(369735-369824)
chr1 (122-191)||(31496294-31496363)
chr1 (130-190)||(17208654-17208714)
chr1 (122-222)||(17412424-17412524)
chr1 (148-222)||(12325424-12325497)
chr1 (123-200)||(26173370-26173447)
chr1 (123-172)||(38733244-38733293)
chr1 (123-175)||(32783220-32783272)
chr1 (123-222)||(25145612-25145711)
chr1 (129-222)||(7653340-7653433)
chr1 (126-203)||(33132388-33132465)
chr1 (142-190)||(9632100-9632148)
chr1 (123-171)||(32783155-32783203)
chr1 (123-191)||(35892149-35892217)
chr1 (125-197)||(51589087-51589159)
chr1 (131-211)||(52676412-52676492)
[»] chr8 (34 HSPs)
chr8 (123-203)||(18004240-18004320)
chr8 (122-222)||(39052821-39052921)
chr8 (123-222)||(20301354-20301453)
chr8 (123-222)||(21087986-21088085)
chr8 (129-222)||(20094687-20094780)
chr8 (126-222)||(39052664-39052760)
chr8 (123-191)||(41790751-41790819)
chr8 (133-222)||(35682908-35682997)
chr8 (123-203)||(31197707-31197787)
chr8 (131-190)||(8466647-8466706)
chr8 (123-222)||(11232321-11232420)
chr8 (128-203)||(15042795-15042870)
chr8 (122-200)||(12688164-12688242)
chr8 (123-180)||(24532355-24532412)
chr8 (125-222)||(37868475-37868572)
chr8 (123-227)||(3157446-3157550)
chr8 (128-203)||(7669517-7669592)
chr8 (123-222)||(8084220-8084319)
chr8 (142-220)||(422347-422425)
chr8 (148-222)||(3157136-3157210)
chr8 (123-191)||(5932107-5932175)
chr8 (132-180)||(37001331-37001379)
chr8 (134-205)||(8716219-8716290)
chr8 (127-218)||(31079471-31079562)
chr8 (148-222)||(39960075-39960149)
chr8 (123-203)||(10615487-10615567)
chr8 (20-82)||(8125637-8125699)
chr8 (123-197)||(19472401-19472475)
chr8 (123-197)||(19543326-19543400)
chr8 (123-197)||(19589296-19589370)
chr8 (134-191)||(7289358-7289415)
chr8 (123-180)||(19256754-19256811)
chr8 (134-190)||(26208172-26208228)
chr8 (123-191)||(34842943-34843011)
[»] chr6 (25 HSPs)
chr6 (123-203)||(17147806-17147886)
chr6 (123-222)||(12330071-12330170)
chr6 (123-222)||(13353294-13353393)
chr6 (127-222)||(33494636-33494731)
chr6 (123-222)||(33796419-33796518)
chr6 (123-203)||(6542854-6542934)
chr6 (122-204)||(6237617-6237699)
chr6 (133-222)||(4868704-4868793)
chr6 (129-214)||(24554216-24554300)
chr6 (123-171)||(3921651-3921699)
chr6 (123-191)||(31961036-31961104)
chr6 (127-222)||(3680109-3680204)
chr6 (143-222)||(6400747-6400826)
chr6 (123-222)||(33631697-33631796)
chr6 (123-172)||(30505595-30505644)
chr6 (123-220)||(34345491-34345587)
chr6 (123-191)||(7638771-7638839)
chr6 (127-222)||(6054266-6054360)
chr6 (122-172)||(11085673-11085723)
chr6 (133-190)||(27993565-27993622)
chr6 (122-190)||(13740773-13740841)
chr6 (122-190)||(13746273-13746341)
chr6 (152-205)||(5648810-5648863)
chr6 (142-191)||(9705133-9705182)
chr6 (148-197)||(15082059-15082108)
[»] chr2 (30 HSPs)
chr2 (123-222)||(16419360-16419459)
chr2 (128-203)||(33606200-33606275)
chr2 (123-203)||(16533405-16533485)
chr2 (123-227)||(17525221-17525324)
chr2 (123-222)||(2029862-2029961)
chr2 (123-222)||(14466302-14466401)
chr2 (123-222)||(40149128-40149227)
chr2 (124-222)||(37812395-37812493)
chr2 (123-219)||(32356478-32356572)
chr2 (123-203)||(34893518-34893598)
chr2 (123-222)||(93246-93345)
chr2 (133-222)||(5711566-5711655)
chr2 (122-222)||(36352053-36352151)
chr2 (123-191)||(18607167-18607235)
chr2 (123-203)||(40379355-40379435)
chr2 (128-203)||(17719498-17719573)
chr2 (148-203)||(31001894-31001949)
chr2 (123-197)||(36316202-36316276)
chr2 (123-168)||(5594119-5594166)
chr2 (123-222)||(44404053-44404153)
chr2 (133-180)||(93561-93608)
chr2 (122-191)||(30701181-30701250)
chr2 (123-203)||(15124694-15124774)
chr2 (123-191)||(24395956-24396024)
chr2 (123-222)||(42895340-42895440)
chr2 (131-221)||(2375056-2375146)
chr2 (123-197)||(5509172-5509246)
chr2 (133-191)||(10523121-10523179)
chr2 (123-189)||(37828782-37828848)
chr2 (133-189)||(13210630-13210686)
[»] chr3 (26 HSPs)
chr3 (122-203)||(46139354-46139435)
chr3 (137-222)||(20327741-20327826)
chr3 (123-203)||(19954363-19954443)
chr3 (123-222)||(52724113-52724212)
chr3 (137-203)||(20303210-20303276)
chr3 (126-203)||(35038340-35038416)
chr3 (123-223)||(20303276-20303376)
chr3 (123-191)||(24866136-24866203)
chr3 (123-222)||(4155417-4155516)
chr3 (123-222)||(34992699-34992798)
chr3 (134-203)||(13574831-13574900)
chr3 (131-172)||(21809082-21809123)
chr3 (123-191)||(45828112-45828180)
chr3 (122-172)||(49629697-49629747)
chr3 (133-222)||(16239695-16239784)
chr3 (126-222)||(39269170-39269266)
chr3 (123-170)||(54567985-54568032)
chr3 (124-210)||(26753425-26753511)
chr3 (123-196)||(28087133-28087206)
chr3 (123-162)||(16926901-16926940)
chr3 (123-197)||(11589878-11589952)
chr3 (133-222)||(25417151-25417240)
chr3 (133-222)||(31317335-31317423)
chr3 (136-180)||(12930061-12930105)
chr3 (150-190)||(21888525-21888565)
chr3 (123-171)||(35018568-35018616)
[»] scaffold0083 (1 HSPs)
scaffold0083 (123-219)||(51366-51462)
[»] scaffold0692 (1 HSPs)
scaffold0692 (123-222)||(5646-5745)
[»] scaffold0519 (1 HSPs)
scaffold0519 (123-222)||(2009-2108)
[»] scaffold0129 (1 HSPs)
scaffold0129 (123-191)||(14396-14464)
[»] scaffold0542 (1 HSPs)
scaffold0542 (129-203)||(5728-5802)
[»] scaffold0400 (1 HSPs)
scaffold0400 (127-180)||(3942-3995)
[»] scaffold0365 (1 HSPs)
scaffold0365 (127-180)||(4586-4639)
[»] scaffold0092 (1 HSPs)
scaffold0092 (123-172)||(5748-5797)
[»] scaffold0366 (2 HSPs)
scaffold0366 (123-222)||(14497-14597)
scaffold0366 (123-222)||(10831-10931)
[»] scaffold0459 (1 HSPs)
scaffold0459 (123-222)||(13190-13290)
[»] scaffold0045 (1 HSPs)
scaffold0045 (123-219)||(41101-41197)
[»] scaffold0003 (1 HSPs)
scaffold0003 (140-190)||(87733-87783)
[»] scaffold0729 (1 HSPs)
scaffold0729 (152-205)||(2616-2669)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13700938 - 13700714
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13700938 cataggcggaccgatcgacctaacccgaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcggctgct 13700839  T
Q  101 agcaccagacttgctctccaatagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaac 200  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13700838 agcaccagacttgtcctccaatggagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacccaccatttatgatcacgaac 13700739  T
Q  201 caaacacaataatgttggtcgtaag 225  Q
    ||||| ||||| |||||||||||||    
T  13700738 caaacccaatagtgttggtcgtaag 13700714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 95492 - 95393
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  95492 agagcctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 95393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 9368688 - 9368787
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  | ||||| ||||| ||||  |||||||||||| ||||| || |||||||    
T  9368688 agagcctcttcaagatccattgggccacctgctatcaggtttccgctattggaccacccaccatgtatgtccacgaaccaaacccaatagtgctggtcgt 9368787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 15480415 - 15480483
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||    
T  15480415 agagcctcttcaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatg 15480483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 17150459 - 17150391
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||    
T  17150459 agagcctcttcaagatccattgggccacctactatcaggtttccgctatcgggccacccaccatttatg 17150391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 18333690 - 18333610
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||    
T  18333690 agagcctcttcaagatccatcgggccacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaa 18333610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 32908944 - 32908844
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||| ||||||||||   ||||||||||| ||||| || ||||||    
T  32908944 tagagcctcttcaagatccattgggccatctgctatcaggtttctgctatcgggtcacccaccatttatgtcaacgaaccaaacccaatagtgctggtcg 32908845  T
Q  222 t 222  Q
    |    
T  32908844 t 32908844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 24270086 - 24269997
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  24270086 caagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgt 24269997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 24346717 - 24346628
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  24346717 caagatccattgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgt 24346628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 6413646 - 6413562
Alignment:
Q  125 agcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaa 209  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||  |||||| ||||||||||  |||||||||| |||||    
T  6413646 agcctcttcaagatccattgggccacctgctatcaggtatccactatcgagccacccaccatttatgtccacgaaccaagcacaa 6413562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 43117740 - 43117839
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||| | ||||||| |||||| ||||||||||||||||||||||||| | ||||| | ||||||||  |||||||||| | ||||| ||||||||||    
T  43117740 agagcctttccaagatctattgggccacctgctatcaggtttccgctatcggaccacccatcatttatgtccacgaaccaagctcaatagtgttggtcgt 43117839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 17352659 - 17352558
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||| ||| | ||| ||||||||||||||||||||  || |||||||| ||||||  |||||||||| | |||||||| |||||||    
T  17352659 agagcctcttcaagatcc-ttgagccacttgctatcaggtttccgctattgggtcacctaccgtttatgtccacgaaccaagcccaataatgctggtcgt 17352561  T
Q  223 aag 225  Q
    |||    
T  17352560 aag 17352558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 6919418 - 6919321
Alignment:
Q  125 agcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| || | ||||  ||||||||||  |||||||||| | ||||| || |||||||    
T  6919418 agcctcttcaagatccattgagtcatctgctatcaggtttccgctttcggaccactcaccatttatgtccacgaaccaagcccaatagtgctggtcgt 6919321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 25258292 - 25258195
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||| | ||||| || |||||||  |||||||||| |  ||||||| |||||    
T  25258292 agagcttctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtc 25258195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 25322082 - 25321985
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||| | ||||| || |||||||  |||||||||| |  ||||||| |||||    
T  25322082 agagcttctccaagatccattgggccacctgctatcaggtttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtc 25321985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 41666973 - 41666884
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| ||||| |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  41666973 caagatccgttgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 41666884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 11896378 - 11896302
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||| |||||||||||| | ||||| ||||||||||||||||||| | ||||| ||||||||||  ||||||||||    
T  11896378 cctctccaagatccattgtgccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaa 11896302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 8081340 - 8081241
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| ||| ||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  8081340 agagcttctccaagatcgattgggccacctgctatcaggtatcccctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 8081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 15590039 - 15590130
Alignment:
Q  131 ttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||  |||||| |||||||||||| |||||||||||| ||| ||  ||||||||||  |||||||||||| ||||| || |||||||    
T  15590039 ttcaagatttattgggccacctgctatcaagtttccgctatcgggctactcaccatttatgtccacgaaccaaacccaatagtgctggtcgt 15590130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 33337435 - 33337367
Alignment:
Q  152 tgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    ||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| | ||||| || |||||    
T  33337435 tgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtc 33337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 17016069 - 17016002
Alignment:
Q  155 tatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||| | ||||| ||||||||||  ||||||||||   ||||| ||||||||||    
T  17016069 tatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagtccaatagtgttggtcgt 17016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 2063725 - 2063683
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttc 165  Q
    ||||||||||||||||||||||| |||| || |||||||||||    
T  2063725 agagcctcttcaagatccattggatcacatgttatcaggtttc 2063683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 8098410 - 8098484
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||| |||||||   |||||||| |||||    
T  8098410 agagcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacccgtcatttatgttcacg 8098484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 29909712 - 29909638
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||| ||| | ||| | |||||| ||||||||||||| ||||||||||||   |||||||| |||||    
T  29909712 agagcctcttcacgattctttgagccacctgttatcaggtttccgttatcaggccacccgtcatttatgttcacg 29909638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 20510867 - 20510788
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||| ||| ||||||||| ||||  ||||||||||||||||| |||||  |||||||  |||||||||  ||||||||||    
T  20510867 agagcgtctccaagatccactgggctacctgctatcaggtttctgctattgggccacc-cccatttatgtccacgaaccaa 20510788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4237 - 4116
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  4237 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 4138  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  4137 ggcaccagacttgccctccaat 4116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42284 - 42405
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  42284 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 42383  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  42384 ggcaccagacttgccctccaat 42405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 51532 - 51653
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  51532 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 51631  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  51632 ggcaccagacttgccctccaat 51653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 67067 - 67188
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  67067 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 67166  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  67167 ggcaccagacttgccctccaat 67188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 69987 - 70108
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  69987 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 70086  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  70087 ggcaccagacttgccctccaat 70108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32976 - 33097
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| | |||    
T  32976 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggcagct 33075  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  33076 ggcaccagacttgccctccaat 33097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 80533 - 80592
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaac 60  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||    
T  80533 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaac 80592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 6887 - 7008
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  6887 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 6986  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  6987 ggcaccagacttgccctccaat 7008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 26057 - 26178
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  26057 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 26156  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  26157 ggcaccagacttgccctccaat 26178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27831 - 27952
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  27831 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 27930  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  27931 ggcaccagacttgccctccaat 27952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48439 - 48560
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  48439 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 48538  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  48539 ggcaccagacttgccctccaat 48560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 51031 - 51152
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  51031 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 51130  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  51131 ggcaccagacttgccctccaat 51152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 80298 - 80419
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  80298 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 80397  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  80398 ggcaccagacttgccctccaat 80419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 63089 - 62968
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| | |||    
T  63089 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggcagct 62990  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  62989 ggcaccagacttgccctccaat 62968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18559 - 18680
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| ||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||| | |||| |||||    
T  18559 cataggcggaccgatcgacccaacccaatgtccaactactagctttttaactgcaacaacttacatatacgctattggagctggaatgaccgcggctgct 18658  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  18659 ggcaccagacttgccctccaat 18680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 46701 - 46822
Alignment:
Q  1 cataggcggaccaatccacctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagctgtaattatcgcgactgct 100  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  46701 cataggcggaccgatcgacccaacccaaggtccaactacgagctttttaactgcaacaacttaaatatacgctattggagctggaattaccgcggctgct 46800  T
Q  101 agcaccagacttgctctccaat 122  Q
     ||||||||||||| |||||||    
T  46801 ggcaccagacttgccctccaat 46822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 25620229 - 25620328
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  25620229 agagcctctccaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 25620328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 31892245 - 31892344
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| ||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||||  |||||||||| | |||||||| |||||||    
T  31892245 agagcctctccaagacctattgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaataatgatggtcgt 31892344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 33834284 - 33834383
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||||||| | ||||| ||||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  33834284 agagcctctccaagatccattgggccacctgctatcaggttttccctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 33834383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 21861387 - 21861467
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  21861387 agagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaa 21861467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 1596686 - 1596785
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||| || |||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  1596686 agagcctctccaagatccattgggccacatgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 1596785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 2404399 - 2404300
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||  | ||||||||| ||||||  |||||||||| | ||||| || |||||||    
T  2404399 agagcctcttcgaaatccattgggtcacctgctatcaggtttccgctattggaccacctaccgtttatgtccacgaaccaagcgcaatagtgctggtcgt 2404300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 36277217 - 36277118
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  36277217 agagcctctccaagatccattgggccacctactatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 36277118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 48661546 - 48661450
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggt 219  Q
    |||||||||| |||| |||||| | |||||||||||||||||||||| || ||||||| ||||||||||  |||||||||| | ||||| |||||||    
T  48661546 agagcctctttaagaaccattgagccacctgctatcaggtttccgctttcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggt 48661450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 20305383 - 20305467
Alignment:
Q  123 agagcctcttcaagatccattgg----gtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||||||    |||| |||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  20305383 agagcctcttcaagatccattggatgggtcatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaa 20305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 22574694 - 22574793
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| |||| |||||||||||||| |||||||||||||||||| |||||| | ||||| ||||||||||   ||||||||| | ||||| ||||||||||    
T  22574694 agagtctctccaagatccattgggccacctgctatcaggtttcagctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgttggtcgt 22574793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 29469698 - 29469797
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||| ||||||| |||||||||| ||||||| ||||||||||  |||||| ||| | ||||| || |||||||    
T  29469698 agagcctctccaagatccattgggccacctgttatcaggcttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgctggtcgt 29469797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 44874569 - 44874479
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataat 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||| || |||| | ||||||||   ||||||||||| |||||||    
T  44874569 agagtctcttcaagatccattgggtcacctgctatcaggtttccacaatcgggtcacccatcatttatgtctacgaaccaaacccaataat 44874479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 33996291 - 33996206
Alignment:
Q  137 atccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| | ||||| ||||| ||||    
T  33996291 atccattgggccacctgctatcaggtttccgcaatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttgatcgt 33996206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 4507025 - 4507093
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||| |||| |||||    
T  4507025 agagccttttcaagatccattgggtcacctgctatcagatttccgttatcagaccaccaaccagttatg 4507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 3519923 - 3519852
Alignment:
Q  151 ctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||| ||||||| ||||||||||  |||||||||| | |||||||| |||||||    
T  3519923 ctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgt 3519852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 3520030 - 3519931
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| || ||||||||||| ||||||||||| ||||| ||||||| || |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  3520030 agagcctctccatgatccattgggccacctgctatctggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 3519931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 2315242 - 2315153
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| ||||||||| ||||||||||||| ||||||| ||| | ||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  2315242 caaggtccattgggccacctgctatcagatttccgcaatcggaccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 2315153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 18826479 - 18826382
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    ||||||||||||||||||| || | || |||||||||  |||||||||||  |||||| ||||||||||| |||||||||| | ||||  ||||||||    
T  18826479 agagcctcttcaagatccactgagccatctgctatcaaatttccgctatcgagccacccaccatttatgaccacgaaccaagcccaattgtgttggtc 18826382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 28080757 - 28080838
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggcca-cctaccatttatgatcacgaaccaa 203  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||||| || || || | |||||||| |||||||||||    
T  28080757 agagcctcttcaagatctattgggccacctgctatcaagtttccgctatctggtcaccccatcatttatgttcacgaaccaa 28080838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 36993299 - 36993223
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaa 199  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||  | ||||| || ||||||| |||||||    
T  36993299 agagcctcttcaagatccattgggccacgtgctatcagatttccgctattggaccacccactatttatgttcacgaa 36993223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 31485650 - 31485551
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||| || |||||||||||||| ||||| ||||||||||| | ||||| ||||||| |||||||||   |||||| ||||| ||||| ||||| ||||    
T  31485650 agagccgctacaagatccattgggccacctactatcaggttttcactatcgggccacccaccatttatatccacgaatcaaacccaatagtgttgttcgt 31485551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 1936327 - 1936242
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    |||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||   ||||||||  | ||||| ||||||||    
T  1936327 aagatccattgaatcacctgttatcaggtttccgctatca-gccacctaccatttatgtcaacgaaccatgcccaatagtgttggtc 1936242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 5871935 - 5871858
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaata 211  Q
    ||||||||||| ||||||||||||||  ||||||||||| | | ||||||||||||||   ||||||||||| |||||    
T  5871935 aagatccattgagtcacctgctatcatatttccgctatcggacgacctaccatttatgtcaacgaaccaaactcaata 5871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 4886427 - 4886502
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||| |||||||||||||| |||||||||||| |||||  |||||  |||||| ||||||||||  ||||||||||    
T  4886427 ctctccaagatccattgggccacctgctatcaagtttctactatcgagccacccaccatttatgtccacgaaccaa 4886502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 9689091 - 9689045
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgct 169  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||    
T  9689091 agagcctctccaagatccattggaccacctgctatcaggtttccgct 9689045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 32279062 - 32278994
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| ||| ||  |||||| ||||||||||||||||| ||||||| ||||| | ||||||||||    
T  32279062 agagcctctccaaaatttattgggccacctgctatcaggttttcgctatcgggccatccaccatttatg 32278994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 26562064 - 26561990
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||| ||||||| ||| | ||||| |||||| ||||||||||||| ||||||| |||| | |||||||| |||||    
T  26562064 agagtctcttcacgattctttgggccacctgttatcaggtttccgttatcaggtcacccatcatttatgttcacg 26561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 10903178 - 10903227
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||| ||| |||||||||||||| |||||| ||||| ||||||||||||    
T  10903178 agagcttctccaagatccattgggccacctgttatcatgtttccgctatc 10903227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 26239896 - 26239855
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcag 174  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  26239896 caagatccgttgggccacctgctatcaggtttccgttatcag 26239855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 5871791 - 5871703
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||| ||||||| ||||||  |||  |||||| | | ||||||||||||||   ||||||||||| ||||| || |||||||    
T  5871791 aagatccattgagtcacctactatcatatttttgctatcggacgacctaccatttatgtcaacgaaccaaactcaatagtgctggtcgt 5871703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 21821899 - 21821947
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctat 171  Q
    |||||||||||||||| | ||||| || |||||| ||||||||||||||    
T  21821899 agagcctcttcaagatacgttgggccaactgctagcaggtttccgctat 21821947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 30727326 - 30727278
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||| ||||| ||||||||||||||||||  ||||||| |||||||||    
T  30727326 ttgggccaccttctatcaggtttccgctattgggccacccaccatttat 30727278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 39164556 - 39164592
Alignment:
Q  143 tgggtcacctgctatcaggtttccgctatcaggccac 179  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  39164556 tgggtcacctgctatcaggtttcccctatctggccac 39164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 40746239 - 40746159
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||| ||||||||||||||||| || ||||   ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  40746239 ttgggccacctgctatcaggttttcgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 40746159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 28245752 - 28245653
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  28245752 agagcctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 28245653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 22231299 - 22231219
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  22231299 agagcctctccaaaatccattgggccacctgctatcaggtttccgctatcgggccacctaccatttatgtccacgaaccaa 22231219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 4645735 - 4645834
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||  |||||| ||| | ||| | ||||||||||    
T  4645735 agagcctctcaaagatccattgggtcacctgctatcaggtttccgctatcgggccacccaccaattatgtccacgaatcaagcccaaaagtgttggtcgt 4645834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 5398431 - 5398337
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| ||||||||| ||||||| |||||||||||||||| ||||| | ||||| ||||||||||  |||||||||| | ||||||||||||||||    
T  5398431 ctctccaagatccaatgggtcatctgctatcaggtttcccctatcggaccacccaccatttatgtccacgaaccaagcccaataatgttggtcgt 5398337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 35788763 - 35788852
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  35788763 caagatccgttgggccacctgctatcaggtttccgttatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 35788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 36686132 - 36686064
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  36686132 agagcctcttcaagattcaatgggccacctgctatcaggtttccgctatcgggccacccaccatttatg 36686064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 6218297 - 6218396
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||| | ||||||||  || ||||||| | ||||| || |||||||    
T  6218297 agagcctctccaagatccattggatcacctactatcaggtttccgctatcaggtcacccatcatttatgtacaagaaccaagcccaatagtgctggtcgt 6218396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 35796968 - 35796869
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||| |||||||||||   |||||||||||||||||||||||| ||||||| |||||||||   |||||||||| | ||||| || |||||||    
T  35796968 agagcctcttcgagatccattggactacctgctatcaggtttccgctatcgggccacccaccatttatctccacgaaccaagcccaatagtgctggtcgt 35796869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 35819108 - 35819039
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||  ||||||||||    
T  35819108 aagatccattgggccacctgctatcaggtttccgctatcgggtcacccaccatttatgtccacgaaccaa 35819039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 33107971 - 33108063
Alignment:
Q  130 cttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||| || ||||||| |||||||||| ||||||||| |||| | ||||| ||||||||||  ||| ||||||| |||||||||||||||||    
T  33107971 cttcaaaattcattgggccacctgctataaggtttccgttatcggaccacccaccatttatgtccactaaccaaatacaataatgttggtcgt 33108063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 12005690 - 12005632
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  12005690 caagatccactgggtcacctactatcaggtttccgctatcaggccacacaccatttatg 12005632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 50543531 - 50543457
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  50543531 cacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 50543457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 25324250 - 25324193
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||    
T  25324250 caagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttat 25324193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 40717432 - 40717364
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | ||||| ||||||||||    
T  40717432 agagcctctccaatatccattgggccacctgccatcaggtttccgctatcggaccacccaccatttatg 40717364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 5398684 - 5398621
Alignment:
Q  140 cattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||| ||||||||||||||||||||||||| | ||||| ||||||||||  ||||||||||    
T  5398684 cattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaa 5398621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 7926421 - 7926478
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||  |||||||    
T  7926421 agagcctctccaagatccattgggccacctgctatcaggtttccactatagggccacc 7926478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 11036726 - 11036673
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatt 187  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||    
T  11036726 aagatccattgggccacctactattaggtttccgctatcaggccacccaccatt 11036673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 27634307 - 27634208
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||  ||| |||||||||||||| |||||| | ||||| ||  ||||||  |||||||||| | ||||| || |||||||    
T  27634307 agagcctctccaagatccattggaccacttgctatcaggtttctgctatcggaccacccactgtttatgtccacgaaccaagcccaatagtgctggtcgt 27634208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 35645391 - 35645304
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaat 210  Q
    |||||||||  | ||||||| ||| ||| |||||||| |||||||||||| |||||||  |||||||||  |||||||||||| ||||    
T  35645391 agagcctctcaacgatccatggggccacatgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaat 35645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 35645680 - 35645593
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaat 210  Q
    |||||||||  | ||||||| ||| ||| |||||||| |||||||||||| |||||||  |||||||||  |||||||||||| ||||    
T  35645680 agagcctctcaacgatccatggggccacatgctatcaagtttccgctatcgggccacccgccatttatgtccacgaaccaaacccaat 35645593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 4464396 - 4464438
Alignment:
Q  130 cttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  4464396 cttcaagatccattgggtcacatgctatcaggtttccgttatc 4464438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 13555468 - 13555422
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgct 169  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||    
T  13555468 agagcctctccaagatccattggaccacctgctatcaggtttccgct 13555422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 26549536 - 26549585
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||| | |||||||||||| | ||||||||    
T  26549536 ttgggtcacctgctatcaggtttctgttatcaggccacccatcatttatg 26549585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 30530153 - 30530104
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||||||    
T  30530153 agagcctctccaagatccattaggccacctgctatcagatttccgctatc 30530104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 21646493 - 21646394
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    ||||| |||| |||||| |||||||||||||||||||| |||| | ||||| | ||||| ||||||||||  || |||||||   ||||| |||||||||    
T  21646493 tagagtctctccaagattcattgggtcacctgctatcatgttttcactatcggaccacc-accatttatgtccatgaaccaagtccaatagtgttggtcg 21646395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 34358021 - 34357966
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggcca 178  Q
    ||||||||| ||||||| |||||| ||| || |||||||||||||||||| |||||    
T  34358021 agagcctctacaagatctattgggccacttgttatcaggtttccgctatcgggcca 34357966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 6666796 - 6666743
Alignment:
Q  137 atccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    |||||||||| |||||  ||||||| ||||||||||||||| || |||||||||    
T  6666796 atccattgggacaccttttatcaggattccgctatcaggccgcccaccatttat 6666743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 6778640 - 6778587
Alignment:
Q  152 tgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaac 205  Q
    ||||||||||||||||||||| |||||||  |||||||||   |||||||||||    
T  6778640 tgctatcaggtttccgctatcgggccaccccccatttatgtctacgaaccaaac 6778587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 13495664 - 13495591
Alignment:
Q  141 attgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatg 214  Q
    |||||| |||||| ||||||||||| ||||||||| || | ||||||||||  |||||| ||| | ||||||||    
T  13495664 attgggccacctgttatcaggtttcggctatcaggtcagccaccatttatgtccacgaatcaagcccaataatg 13495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 40716598 - 40716537
Alignment:
Q  136 gatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    ||||| ||||| |||||||||||||||||||| |||| |||||||   |||||||| |||||    
T  40716598 gatccgttgggccacctgctatcaggtttccgttatcgggccacccgtcatttatgttcacg 40716537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 22445545 - 22445633
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaata 211  Q
    |||||||||||||||||||||| | ||||| |||| ||| || | ||||| | | ||| ||| ||||||  |||||||||||| |||||    
T  22445545 agagcctcttcaagatccattgagccacctactattaggattacactatcggactacccaccgtttatgtccacgaaccaaactcaata 22445633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 25713251 - 25713350
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  25713251 agagcctctccaagatccattgggccacctgctatcaagtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 25713350  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 4098394 - 4098295
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| ||||||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||| ||||||  |||||||||| | ||||||||||||||||    
T  4098394 agagactcttcaagatccattgggccacctgcaatcaggtttctgctatcgggccacccaccctttatgtccacgaaccaagcccaataatgttggtcgt 4098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 30369928 - 30370007
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaacca 202  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||  |||||||||    
T  30369928 agagcctctccaagatccattgggtcacctgctatcaggtttccactatcgggccacccaccatttatgtccacgaacca 30370007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 2859619 - 2859519
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||| |||||| ||||||| ||||||||||  |||||||||| | ||||| || ||||||    
T  2859619 tagagcctcttcaagatccattgggccaccttctattaggtttctgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcg 2859520  T
Q  222 t 222  Q
    |    
T  2859519 t 2859519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 12376652 - 12376565
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  12376652 aagatccattgggccacctgctatcaggtt-ctgctatcaggccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgt 12376565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 52961440 - 52961508
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||    
T  52961440 agagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccagttatg 52961508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 51460433 - 51460346
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaat 210  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| ||  |||||||||||| ||||    
T  51460433 agagcctctccaagatccattgggccacctgctatcaggtttccgctatcgggcgacccaccatttgtgtccacgaaccaaactcaat 51460346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 16163028 - 16163094
Alignment:
Q  125 agcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  16163028 agcctctccaagatccaatgggccacctgctatcaggtttccgctatcgggccacctaccatttatg 16163094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 7307821 - 7307913
Alignment:
Q  130 cttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||  |||||||||||||||||||||  | ||||| ||||||||||  |||||||||||  ||||| ||||||||||    
T  7307821 cttcaagatccattgggtcgtctgctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaaatccaatagtgttggtcgt 7307913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 35772122 - 35772202
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||  ||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  35772122 agagccttctcaagatccattgggccatctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaa 35772202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 4112766 - 4112667
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||   ||||| ||||||||||   ||||||||| | ||||| ||||||||||    
T  4112766 agagcctctccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatttatgtcaacgaaccaagcccaatagtgttggtcgt 4112667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 26177001 - 26177081
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||||| | ||||| |||||||||   ||||||||||    
T  26177001 agagcctctccaagatccattgggccacctgctatcagatttccgctatcggaccacccaccatttatatccacgaaccaa 26177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 38668218 - 38668322
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| || |||||||||||||||||| ||||||||||| |||||| || |||||| ||||||||  || ||||||| | ||||| || |||||||    
T  38668218 agagcctctccatgatccattgggtcacctgttatcaggtttctgctatcgggtcacctatcatttatgtccatgaaccaagcccaatattgctggtcgt 38668317  T
Q  223 aagtg 227  Q
     ||||    
T  38668318 gagtg 38668322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 39348333 - 39348244
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| ||||||||| ||||||||||||||||||| ||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  39348333 caaggtccattgggccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 39348244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 40524866 - 40524789
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaac 200  Q
    ||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||| ||| ||||||  |||||||    
T  40524866 agagcctcttcaagatccattggttcatctgctatcaagttttcgctatcagaccacccaccgtttatgtccacgaac 40524789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 27413440 - 27413539
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| ||||||| ||| |  |||||| |||||| ||||||||||| ||||||| ||||||||||  |||||| ||| | ||||| ||||||||||    
T  27413440 agagcctctccaagatctattagaccacctgttatcagatttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgttggtcgt 27413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 4112996 - 4112898
Alignment:
Q  124 gagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| |||||||||||| | ||||  ||||||||||||||||||  | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  4112996 gagcctctccaagatccattgagccaccatctatcaggtttccgctattggaccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgt 4112898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 33156837 - 33156895
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||||    
T  33156837 caagatccgttggttcacctgctatcaggtttccgctatcgggccatccaccatttatg 33156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 369735 - 369824
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatc-aggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||| ||| ||||||||||||||||||||||  || |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  369735 aagatccattggatcagctgctatcaggtttccgctatcggggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 31496363 - 31496294
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||| ||||| ||||||||||||  |||||||||||||||| |||||||| | ||||| ||||||||||    
T  31496363 tagagtctctttaagatccattggaccacctgctatcaggttcccgctatcggaccacccaccatttatg 31496294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 17208654 - 17208714
Alignment:
Q  130 cttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||||||| ||| | || |||||||||||||||||||||| ||||||| |||||||||    
T  17208654 cttcaagatcccttgagccatctgctatcaggtttccgctatcgggccacccaccatttat 17208714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 17412424 - 17412524
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||||||||||||||||||||| | |||| ||||||||| ||| || ||||  |||||| | ||||||||  |||||| ||| | ||||| |||||||||    
T  17412424 tagagcctcttcaagatccattagatcacttgctatcagattttcgttatcgagccacccatcatttatgtccacgaatcaagcccaatagtgttggtcg 17412523  T
Q  222 t 222  Q
    |    
T  17412524 t 17412524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 12325497 - 12325424
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||| | | |||| ||||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  12325497 cacctgctatcaggtt-ctgttatcgggccacctaccatttatgtccacgaaccaagcccaatagtgttggtcgt 12325424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 26173447 - 26173370
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaac 200  Q
    ||||||||||| | |||||| ||  ||||||||||||||||||||||||| | || || ||||||||||  |||||||    
T  26173447 agagcctcttcgatatccatcggaccacctgctatcaggtttccgctatcggaccccccaccatttatgtccacgaac 26173370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 38733244 - 38733293
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||||    
T  38733244 agagtctctccaagatccattggaccacctgctatcaggtttccgctatc 38733293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 32783272 - 32783220
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcagg 175  Q
    |||| |||||||||||||||||   |||||||||||||||||| |||||||||    
T  32783272 agagtctcttcaagatccattgtaccacctgctatcaggtttctgctatcagg 32783220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 25145711 - 25145612
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| ||||||| ||||   |||||||||||||||||||| |||| | ||||| |||||| |||  |||||| ||| | ||||| || |||||||    
T  25145711 agagcctctccaagatctattgacccacctgctatcaggtttccgttatcggaccacccaccattaatgtccacgaatcaagctcaatagtgctggtcgt 25145612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 7653340 - 7653433
Alignment:
Q  129 tcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||| | || ||| | |||||  |||||| ||||| || || | ||||||||||  |||||||||||| ||||| ||||||||||    
T  7653340 tcttcaagatccaataggccacttactatccagtttccactatcggggcatccaccatttatgtacacgaaccaaacgcaatagtgttggtcgt 7653433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 33132465 - 33132388
Alignment:
Q  126 gcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||| || || ||||||||||  || ||||||||||| |||||||| |||||   |||||||| |||||||||||    
T  33132465 gcctctttaaaattcattgggtcatatgttatcaggtttctgctatcagaccacccctcatttatgttcacgaaccaa 33132388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 9632100 - 9632148
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||||| ||||||||| |||||||||||  |||||| |||||||||    
T  9632100 ttgggtcacatgctatcagttttccgctatctagccacccaccatttat 9632148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 32783203 - 32783155
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctat 171  Q
    |||||||||||||||| |||||   |||||||||||||||||| |||||    
T  32783203 agagcctcttcaagattcattgtagcacctgctatcaggtttctgctat 32783155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 35892149 - 35892217
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||| ||||||||||| ||||||| ||| ||||||||  |||| |||||| || |||| ||||||||||    
T  35892149 agagtctcttcaagattcattgggccacttgctatcatatttctgctatcggggcacccaccatttatg 35892217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 51589087 - 51589159
Alignment:
Q  125 agcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||| ||| | ||||| |||||| ||||||||||||| |||| |||||||   |||||||| |||||    
T  51589087 agcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacccgtcatttatgttcacg 51589159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 52676492 - 52676412
Alignment:
Q  131 ttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaata 211  Q
    |||||||||||  ||| ||||| ||||||| ||||||| ||||||||||| | |||||||   |||| ||||||| |||||    
T  52676492 ttcaagatccaccgggccacctactatcagatttccgcaatcaggccacccatcatttatatccacgcaccaaacccaata 52676412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 18004320 - 18004240
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  18004320 agagcctctccaagatccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaa 18004240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 39052921 - 39052821
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||||||||| ||||||||||| || | ||||||||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| |||||||||    
T  39052921 tagagcctctccaagatccatttggccccctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcg 39052822  T
Q  222 t 222  Q
    |    
T  39052821 t 39052821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 20301354 - 20301453
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||   ||||||||| | ||||| || |||||||    
T  20301354 agagcctcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgt 20301453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 21087986 - 21088085
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||   ||||||||| | ||||| || |||||||    
T  21087986 agagcctcttcaagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgt 21088085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 20094780 - 20094687
Alignment:
Q  129 tcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  20094780 tcttcaagatccattgggccacctcctatcaggttttcgctatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 20094687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 39052760 - 39052664
Alignment:
Q  126 gcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| ||||||||||    
T  39052760 gcctctccaagatcaatttggccacctgctatcaggtttccgctatccggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgt 39052664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 41790751 - 41790819
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||    
T  41790751 agagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatg 41790819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 35682997 - 35682908
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  35682997 caagatccattgggccacctgctattaggtttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgt 35682908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 31197707 - 31197787
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||  ||||||||||    
T  31197707 agagcctctccgagatccattgggccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaa 31197787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 8466706 - 8466647
Alignment:
Q  131 ttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||    
T  8466706 ttcaagatccattgggccacctgctatcaggtttccgctatcaagccacccaccatttat 8466647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 11232420 - 11232321
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||  | |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  11232420 agagcctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 11232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 15042870 - 15042795
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||    
T  15042870 ctctccaagattcattgggccacctgctatcaggtttccgctatcaggccacccaccgtttatgtccacgaaccaa 15042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 12688164 - 12688242
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||  ||||||| ||||||||||  |||||||    
T  12688164 tagagcctcttcaagatccattgggccacctgctatcaggtttcttctattgggccacccaccatttatgtccacgaac 12688242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 24532412 - 24532355
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  24532412 agagccccttcaagatccattgggccacctgctatcaggtttccgctatcgggccacc 24532355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 37868572 - 37868475
Alignment:
Q  125 agcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||| |||||||||||||| |||| ||||||| |||||||||||  ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  37868572 agcctctccaagatccattgggccacccgctatcaagtttccgctattgggccacccaccatttatgtacacgaaccaagcccaatattgctggtcgt 37868475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 3157550 - 3157446
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| ||| |||||||||  ||||||||||||||||| ||||||| || |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  3157550 agagcctctccaaaatccattggaccacctgctatcaggttttcgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 3157451  T
Q  223 aagtg 227  Q
     ||||    
T  3157450 gagtg 3157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 7669517 - 7669592
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||| | ||||| ||||||||||  ||||||||||    
T  7669517 ctcttcaagatccattgagccacctgctatcaggtttccactatcggaccacccaccatttatgtccacgaaccaa 7669592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 8084220 - 8084319
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||| ||||||||||||| ||||||  |  |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  8084220 agagcctctccaagatccattgggccacatgctatcaggttttcgctattggatcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 8084319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 422425 - 422347
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    ||||| |||||||||||||||||||||| || ||||||| ||||||| ||  ||||||||||   ||||||||||||||    
T  422425 ttgggccacctgctatcaggtttccgctctcgggccacccaccatttttgtccacgaaccaagttcaataatgttggtc 422347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 3157210 - 3157136
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||||||||||||||| || |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  3157210 cacctgctatcaggtttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 3157136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 5932175 - 5932107
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||||||  ||||| |||||| ||||||| |||| ||||||| ||||||||||    
T  5932175 agagcctctccaagatccattggaccacctactatcacgtttccgttatcgggccacccaccatttatg 5932107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 37001331 - 37001379
Alignment:
Q  132 tcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  37001331 tcaagatccattgggccacctgctgtcaggtttccgctatcgggccacc 37001379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 8716219 - 8716290
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaac 205  Q
    ||||||||||| ||||| |||||| |||||||||||||| || |||| ||||||||||  ||||||| ||||    
T  8716219 aagatccattgagtcacatgctattaggtttccgctatcgggtcaccgaccatttatgtccacgaacaaaac 8716290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 31079562 - 31079471
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttgg 218  Q
    ||||| |||||||||||||  ||| || |||||| ||||| ||||| ||||||| ||||||||||   ||||||||| | ||||||||||||    
T  31079562 cctctacaagatccattggaccacatgttatcagatttccactatcgggccacccaccatttatgtgaacgaaccaagcccaataatgttgg 31079471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 39960075 - 39960149
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||||||  || ||| ||||||||||  |||||||||| | ||||| || |||||||    
T  39960075 cacctgctatcaggtttccgctatcgagctacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 39960149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 10615487 - 10615567
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| ||||||||||||   |||||| |||||||||||||||||| || |||| || ||||||   ||||||||||    
T  10615487 agagcctctccaagatccattgtaccacctgatatcaggtttccgctatcgggtcaccaactatttatctccacgaaccaa 10615567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 8125699 - 8125637
Alignment:
Q  20 ctaacccaaggtccaactacaagctttttaactacaacaacttaaatatacgctattggagct 82  Q
    ||||| ||| || ||||||| |||||||||| | |||||| ||||||||||||||||| ||||    
T  8125699 ctaactcaaagtacaactacgagctttttaattgcaacaatttaaatatacgctattgaagct 8125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 19472475 - 19472401
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    ||||||||||||  || | ||||| |||||| |||||||||||||||||| |||||||   |||||||| |||||    
T  19472475 agagcctcttcacaattctttgggccacctgttatcaggtttccgctatcgggccacccgtcatttatgttcacg 19472401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 19543400 - 19543326
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    ||||||||||||  || | ||||| |||||| |||||||||||||||||| |||||||   |||||||| |||||    
T  19543400 agagcctcttcacaattctttgggccacctgttatcaggtttccgctatcgggccacccgtcatttatgttcacg 19543326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 19589296 - 19589370
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    ||||||||||||  || | ||||| |||||| |||||||||||||||||| |||||||   |||||||| |||||    
T  19589296 agagcctcttcacaattctttgggccacctgttatcaggtttccgctatcgggccacccgtcatttatgttcacg 19589370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 7289415 - 7289358
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||| |||| || ||||||||||||||||| ||||||||  ||||| ||||||||||    
T  7289415 aagattcatttggccacctgctatcaggttttcgctatcaaaccacccaccatttatg 7289358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 19256811 - 19256754
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||| |||||||    
T  19256811 agagcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacc 19256754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 26208228 - 26208172
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||| ||||| ||||||||||||||||| | ||| | ||||||| |||||||||    
T  26208228 aagatccgttgggccacctgctatcaggttttccctaacgggccacccaccatttat 26208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 34842943 - 34843011
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||| ||| | ||||| |||||| |||||||||| || |||| ||||||| | ||||||||    
T  34842943 agagcctcttcacgattctttgggccacctgttatcaggttttcgttatcgggccacccatcatttatg 34843011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 17147886 - 17147806
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||    
T  17147886 agagcctctccaacatccattgggtcacctgctatcaggtttccgctatcaggtcacccaccatttatgtccacgaaccaa 17147806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 12330170 - 12330071
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| | |||| ||| |||||||    
T  12330170 agagcctctccaagatccattgggccacctgctatcaggtttccgccatcgggccacccaccatttatgtccacgaaccaagcccaattatgctggtcgt 12330071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 13353294 - 13353393
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  13353294 agagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 13353393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 33494636 - 33494731
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||| ||||||||||| | ||||| || |||||||    
T  33494636 cctcttcgagatccattgggtcacctgctatcaggtttccactatcgggccacccaccgtttatgttcacgaaccaagcccaatagtgctggtcgt 33494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 33796419 - 33796518
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  33796419 agagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 33796518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 6542934 - 6542854
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| || |||| ||||||||||  ||||||||||    
T  6542934 agagcctcttcaagatccattgggtcacttgctatcaggtttccgttatcgggtcacccaccatttatgtccacgaaccaa 6542854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 6237699 - 6237617
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaa 204  Q
    ||||| ||||||||||||||||||  ||| ||||| ||||||||||||||| | ||||| ||||||||||  |||||||||||    
T  6237699 tagagtctcttcaagatccattggaccacttgctaccaggtttccgctatcggaccacccaccatttatgtccacgaaccaaa 6237617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 4868793 - 4868704
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||  |||| |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  4868793 caagatccgctgggccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 4868704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 24554216 - 24554300
Alignment:
Q  129 tcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatg 214  Q
    |||||||||||||||||  |||||||||||||||| |||||||||| ||||| ||||||||||   ||||||||| | ||||||||    
T  24554216 tcttcaagatccattggc-cacctgctatcaggttaccgctatcagaccacccaccatttatgtcaacgaaccaagctcaataatg 24554300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 3921651 - 3921699
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctat 171  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  3921651 agagcctcttcaagatccattggatcacctgctatcaagtttccgctat 3921699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 31961036 - 31961104
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||||  ||| || ||||||||||    
T  31961036 agagcctctccaagatccattgggccacctgctatcaggtttctgctatcgtgccccccaccatttatg 31961104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 3680109 - 3680204
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||| ||| |||||| |||||||||||||| |||||||||||||| || || | ||||||||||  ||| |||||| | ||||| ||||||||||    
T  3680109 cctctccaaaatccatcgggtcacctgctattaggtttccgctatcgggtcatccaccatttatgtccacaaaccaagcccaatagtgttggtcgt 3680204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 6400826 - 6400747
Alignment:
Q  143 tgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||||||||||||| |||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  6400826 tgggtcacctgctatcaggtttctgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 6400747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 33631796 - 33631697
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||| ||| ||||||| ||||||||||||| ||||||||||| |||||| || |||| ||||||||||  ||| |||||| | ||||| || |||||||    
T  33631796 agagcatctccaagatctattgggtcacctgatatcaggtttctgctatcgggacacccaccatttatgtccactaaccaagctcaatagtgctggtcgt 33631697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 30505595 - 30505644
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  30505595 agagcctctccaagatgcattgggtcacctgctatcaggtttcccctatc 30505644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 34345491 - 34345587
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtc 220  Q
    |||||||||| || ||| |||| | |||||||||||||||||| | |||| | |||| || ||||||||  |||||||||||||||||| ||||||||    
T  34345491 agagcctctttaa-atctattgagccacctgctatcaggtttcagttatcggaccacttatcatttatgtccacgaaccaaacacaatagtgttggtc 34345587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 7638839 - 7638771
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||  |||| | ||||||||    
T  7638839 agagcttctccaagatctattggatcacctgctatcaggtttccgctatcagatcacccatcatttatg 7638771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 6054266 - 6054360
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||| |||| || ||||||||||||||||||||||||  |  |||| ||| ||||||  || ||||||||| |||||||| |||||||    
T  6054266 cctcttcaagattcattaggccacctgctatcaggtttccgctattggatcaccgaccgtttatgtccatgaaccaaac-caataatgatggtcgt 6054360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 11085673 - 11085723
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    |||||||||| |||||| | ||||| |||||||||||||||||||||||||    
T  11085673 tagagcctctccaagatacgttgggccacctgctatcaggtttccgctatc 11085723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 27993622 - 27993565
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||||||| |||||| |   |||||||||||||||||| ||||||||||||||||    
T  27993622 caagatccattaggtcacttatcatcaggtttccgctatcaagccacctaccatttat 27993565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 13740773 - 13740841
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    |||||||||| ||||||||||| |||||||  ||||||||||| | ||||| ||||||| || ||||||    
T  13740773 tagagcctctgcaagatccattaggtcaccatctatcaggttttccctatcgggccacccacaatttat 13740841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 13746273 - 13746341
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    |||||||||| ||||||||||| |||||||  ||||||||||| | ||||| ||||||| || ||||||    
T  13746273 tagagcctctgcaagatccattaggtcaccatctatcaggttttccctatcgggccacccacaatttat 13746341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 5648863 - 5648810
Alignment:
Q  152 tgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaac 205  Q
    ||||||||||||||||||||| ||||||  || ||||||| ||||||| |||||    
T  5648863 tgctatcaggtttccgctatcgggccactcactatttatgttcacgaatcaaac 5648810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 9705133 - 9705182
Alignment:
Q  142 ttgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||| |||||||||||||||||||  |||| ||||||| ||||||||||    
T  9705133 ttgggccacctgctatcaggtttccattatcgggccacccaccatttatg 9705182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 15082108 - 15082059
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||||||||||  |||| ||||||| |||||||||| |||||    
T  15082108 cacctgctatcaggtttccattatcgggccacccaccatttatgttcacg 15082059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 16419360 - 16419459
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  16419360 agagcctctccaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgt 16419459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 33606275 - 33606200
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  33606275 ctcttcaagatctattgggtcacttgctatcaggtttccgctatcaggccacccaccatttatgtccacgaaccaa 33606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 16533405 - 16533485
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||||    
T  16533405 agagcctcttcaagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccacgaaccaa 16533485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 17525324 - 17525221
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  17525324 agagcctcttcaa-atccattgggccacctgctatcaggtatccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgatggtcgt 17525226  T
Q  223 aagtg 227  Q
     ||||    
T  17525225 gagtg 17525221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 2029862 - 2029961
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  2029862 agagcctctccaagatccattgggccacctgctattaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 2029961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 14466401 - 14466302
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||| || |||||||||||||||||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  14466401 agagcctctccaagatccattgggccacttgttatcaggtttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 14466302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 40149227 - 40149128
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||| || |||||||  |||||||||| | ||||| || |||||||    
T  40149227 agagcctcttcaagatccattgggtcacctgctatcagatttcagctatcggaccacccactatttatgtccacgaaccaagcccaatagtgctggtcgt 40149128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 37812493 - 37812395
Alignment:
Q  124 gagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||| ||  ||||||  |||||||||| | |||||||| |||||||    
T  37812493 gagcctctccaagatccattgggccacctgctatcaggtttctgctatcgggccacccactgtttatgtccacgaaccaagcccaataatgctggtcgt 37812395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 32356478 - 32356572
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggt 219  Q
    ||||||||||||| || ||||||| ||||||||  ||||||||||||||| ||| ||||||||||||||  ||||||||||||  |||| |||||||    
T  32356478 agagcctcttcaatattcattgggccacctgct--caggtttccgctatcgggctacctaccatttatgtccacgaaccaaactgaatagtgttggt 32356572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 34893518 - 34893598
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| ||||||| | ||||| ||||||||||  ||||||||||    
T  34893518 agagcctctccaagatccattgggccacctactatcaggttttcgctatcggaccacccaccatttatgtccacgaaccaa 34893598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 93345 - 93246
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||| |||| ||||||| |||| |||||  |||||| ||| | ||||| || |||||||    
T  93345 agagcctctccaagatccattgggccacctgctatcagctttccgttatcgggccacccaccaattatgtccacgaatcaagcccaatagtgctggtcgt 93246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 5711655 - 5711566
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| ||||  |||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  5711655 caagatccgttggaccacctgctatcaggtttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 5711566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 36352151 - 36352053
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||||||| |||| ||||||| |||||||||   ||||||| || | ||||| |||||||||    
T  36352151 tagagtctcttcaagatccatcgggccacctgttatcaggtttccgttatcgggccacccaccatttat--ccacgaacgaagcccaatagtgttggtcg 36352054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 18607235 - 18607167
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||| |||| ||| ||| ||||||||||    
T  18607235 agagcctctccaagatccattgggccacatgctatcaggtttccgttatcgggcaacccaccatttatg 18607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 40379435 - 40379355
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||| | ||||||||||| || ||||||||||||||||||| ||||| ||||||| |||||||||   ||||||||||    
T  40379435 agagcctttccaagatccattaggccacctgctatcaggtttcctctatcgggccacccaccatttatatccacgaaccaa 40379355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 17719498 - 17719573
Alignment:
Q  128 ctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||| ||||||||||| || ||||||||||||||||||| ||||| ||||| | ||||||||||  ||||||||||    
T  17719498 ctctccaagatccatttggccacctgctatcaggtttcccctatccggccatccaccatttatgtccacgaaccaa 17719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 31001949 - 31001894
Alignment:
Q  148 cacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||   ||||||||||    
T  31001949 cacctgctatcaggtttccgctatcatgccacctaccatttatatccacgaaccaa 31001894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 36316276 - 36316202
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||| ||||||| |||||||||| |||||    
T  36316276 agagcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacccaccatttatgttcacg 36316202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 5594119 - 5594166
Alignment:
Q  123 agagcctcttcaagatccattgggt--cacctgctatcaggtttccgc 168  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||    
T  5594119 agagcctcttcaagatccattgggtcacacctgctatcaggtttccgc 5594166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 44404153 - 44404053
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccg-ctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||| |||| |||||||||||||  |||||||||||||||||||| ||||| || |||| || |||||||  || ||||||| | ||||| |||||||||    
T  44404153 agagtctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcg 44404054  T
Q  222 t 222  Q
    |    
T  44404053 t 44404053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 93608 - 93561
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||    
T  93608 caagatccattgggtcacctactatcaggtttccgttatcgggccacc 93561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 30701250 - 30701181
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||   ||||| ||||| | ||||||||||    
T  30701250 tagagtctcttcaagatccattgggccacctactatcaggttttttctatcgggccatccaccatttatg 30701181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 15124774 - 15124694
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||| |||| |||||||||||||  ||||||||||||||||| || |||| || || | ||||||||||  ||||||||||    
T  15124774 agagtctctccaagatccattggaccacctgctatcaggttttcgttatcgggtcatccaccatttatgtccacgaaccaa 15124694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 24395956 - 24396024
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||||||||||  |||||||| ||| |||| | ||||| | ||||| ||||||||||    
T  24395956 agagcctcttcaagatccattggaccacctgctctcatgttttcactatcggaccacccaccatttatg 24396024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 42895340 - 42895440
Alignment:
Q  123 agagcctcttcaagatccatt-gggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||||||||  |||||||||| ||| |||||| ||||| |||||||||||| ||| ||| ||||||||||  |  |||||||||  |||| |||||||||    
T  42895340 agagcctctctaagatccattagggccacctgatatcaagtttccgctatcgggcgacccaccatttatgtccctgaaccaaacctaatagtgttggtcg 42895439  T
Q  222 t 222  Q
    |    
T  42895440 t 42895440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 2375146 - 2375056
Alignment:
Q  131 ttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||| ||| ||||||||||||||||||||| ||| || |||| | ||||| |||||||||  ||| ||| ||| |  ||||||||||||||    
T  2375146 ttcaggattcattgggtcacctgctatcagattttcgttatcggaccacccaccatttatattcatgaatcaagccaaataatgttggtcg 2375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 5509172 - 5509246
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||| |||||||   |||||||| |||||    
T  5509172 agagcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacccgtcatttatgttcacg 5509246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 10523121 - 10523179
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||  |||||||||||||||||| ||||||| ||||  |||||| ||||||||||    
T  10523121 caagatctgttgggtcacctgctatcaagtttccgttatcgagccacccaccatttatg 10523179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 37828848 - 37828782
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccattta 189  Q
    ||||||||||||| ||||||||| ||||||||||| || ||| ||||||| |  |||| ||||||||    
T  37828848 agagcctcttcaatatccattggatcacctgctattagattttcgctatcggatcacccaccattta 37828782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 13210630 - 13210686
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccattta 189  Q
    |||||||||||||| ||| ||||||||| ||||| ||||| ||| ||| ||||||||    
T  13210630 caagatccattgggccacatgctatcagatttcctctatcgggcaacccaccattta 13210686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 46139354 - 46139435
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| |||| ||||||    
T  46139354 tagatcctctccaagatccattgggtcacctgctatcaggtttctgctatcgggccacccaccatttatgttcacaaaccaa 46139435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 20327826 - 20327741
Alignment:
Q  137 atccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||  || ||||||| | ||||| ||||||||||    
T  20327826 atccattgggccacctgctatcaggtttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagtgttggtcgt 20327741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 19954443 - 19954363
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||| | ||||| ||||||||||  ||||||||||    
T  19954443 agagcctcttcaagatccattgggccatctgctatcaggttttcgctatctgaccacccaccatttatgtccacgaaccaa 19954363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 52724212 - 52724113
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||||||| || ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||  || ||||||||| | ||| ||||| ||||    
T  52724212 agagcctcttcaacattcattgggtcacatgctatcaggttttcgctatcgggccacccaccatttatgtccatgaaccaaactcgatagtgttgatcgt 52724113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 20303276 - 20303210
Alignment:
Q  137 atccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||  ||||||||||    
T  20303276 atccattgggtcacctgctatcaggtttccgctatcggtccacccaccatttatgtccacgaaccaa 20303210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 35038416 - 35038340
Alignment:
Q  126 gcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  35038416 gcctctccaagatccattgggccacctgcaatcaggtttccgctatc-ggccacccaccatttatgtccacgaaccaa 35038340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 20303376 - 20303276
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||||  || |||||||||| ||||||||||||||||||| ||||| | ||||| ||||||||||  ||||||||||   ||||| ||||||||||    
T  20303376 agagcctctctaaaatccattgggccacctgctatcaggtttccactatcggtccacccaccatttatgtccacgaaccaagtccaatagtgttggtcgt 20303277  T
Q  223 a 223  Q
    |    
T  20303276 a 20303276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 24866136 - 24866203
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  24866136 agagcctcttcaagattcattgggccacctgctatcaggtttccgttat-tggccacctaccatttatg 24866203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 4155417 - 4155516
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| |||| |||||| ||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||   ||||||||| | ||||| || |||||||    
T  4155417 agagtctctccaagattcattgggccacctgctatcaggtttccgctatcgggccacccaccgtttatgtcgacgaaccaagcccaatagtgctggtcgt 4155516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 34992699 - 34992798
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||| |||| |||| ||||||||| |||||||||||||||||||||| || || |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  34992699 agagtctctccaaggtccattgggccacctgctatcaggtttccgctgtcgggtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 34992798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 13574900 - 13574831
Alignment:
Q  134 aagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||||||| |||||||||||||||||||||||||  | |||| ||||||||||  ||||||||||    
T  13574900 aagatccattgggccacctgctatcaggtttccgctatcgtgtcacccaccatttatgtccacgaaccaa 13574831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 21809123 - 21809082
Alignment:
Q  131 ttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21809123 ttcaagatccattgggtcacctgctatcaggtttccgctatc 21809082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 45828112 - 45828180
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||||| | ||||||||| |||||||||||||||  |||||| ||||||||||    
T  45828112 agagcctctccaagatccattgcgccacctgctaccaggtttccgctatcgagccacccaccatttatg 45828180  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 49629697 - 49629747
Alignment:
Q  122 tagagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||    
T  49629697 tagagcctcttcaagatccattggaccacctgctatcaggtttctgctatc 49629747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 16239695 - 16239784
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| || || |||||||||||||||||||| ||||  |||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  16239695 caagatccgtttggccacctgctatcaggtttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgt 16239784  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 39269170 - 39269266
Alignment:
Q  126 gcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||| || ||||||||||| |||||||||||||||  ||| |||| | ||||| ||||||||||  |||||||||| |  |||| ||||||||||    
T  39269170 gcctctccatgatccattgggccacctgctatcaggtggccgttatcggaccacccaccatttatgtccacgaaccaaccctaatagtgttggtcgt 39269266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 54567985 - 54568032
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgcta 170  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||    
T  54567985 agagcctctccaagatccattgagccacctgctatcaggtttccgcta 54568032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 26753511 - 26753425
Alignment:
Q  124 gagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaat 210  Q
    |||| |||||||||| |||||| ||||||||||||||| || | ||||| || ||||  || |||||| ||||||||||||| ||||    
T  26753511 gagcatcttcaagattcattggatcacctgctatcaggatttcactatcggggcacccgccgtttatgttcacgaaccaaacccaat 26753425  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 28087206 - 28087133
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcac 196  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||| ||||||||  |||||||| ||||    
T  28087206 agagcctcttcacgattctttgggccacctgttatcaggtttccgttatcgggccacctgtcatttatgttcac 28087133  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 16926940 - 16926901
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggt 162  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  16926940 agagtctcttcaagatccattgggtcacctgttatcaggt 16926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 11589878 - 11589952
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacg 197  Q
    |||||||||||| ||| | ||||| |||||| ||||||||||||| |||  || ||||| ||||||||| |||||    
T  11589878 agagcctcttcacgattctttgggccacctgttatcaggtttccgttattgggtcacctgccatttatgttcacg 11589952  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 25417151 - 25417240
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||| ||||||||||| |||||||| ||| ||| |||| | ||||| | ||||||||  || ||||||| | |||||||| |||||||    
T  25417151 caagattcattgggtcacatgctatcaagttaccgttatcggaccacccatcatttatgtccaggaaccaaccccaataatgatggtcgt 25417240  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 31317335 - 31317423
Alignment:
Q  133 caagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    |||||||| ||||  ||||| |||||||||||  | |||| ||||||| ||||||||||  |||||||||||| ||||| || |||||||    
T  31317335 caagatccgttggaccacctactatcaggtttt-gttatcgggccacccaccatttatgtccacgaaccaaactcaatagtgctggtcgt 31317423  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 12930105 - 12930061
Alignment:
Q  136 gatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    ||||| ||||| |||||||||||||||||| | ||||||||||||    
T  12930105 gatccgttgggccacctgctatcaggtttctgttatcaggccacc 12930061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 21888525 - 21888565
Alignment:
Q  150 cctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  21888525 cctgctatcaggtttccgctatcggaccacccaccatttat 21888565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 35018568 - 35018616
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctat 171  Q
    ||||||| | |||||||| ||||||||| |||||| |||||||||||||    
T  35018568 agagcctatccaagatccgttgggtcacttgctataaggtttccgctat 35018616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 51366 - 51462
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggt 219  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||  ||||| ||||||||| |||||||| ||||||||||| | ||||| |||||||    
T  51366 agagcttctccaagatccattgggtctcctgctatcaggtttctactatcgggccacctatcatttatgttcacgaaccaagcccaatagtgttggt 51462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 5745 - 5646
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||| | ||||| ||||||||||  |||||||||| | ||||| || |||||||    
T  5745 agagcctctccaagatccattgagccacctgctatcaggtttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 5646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 2009 - 2108
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcgt 222  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||||  | |||| ||||||||||  |||||||||| | ||||| || |||||||    
T  2009 agagcctctccaagatccattgggccacctgttatcaggtttccgctatcgagtcacccaccatttatgtccacgaaccaagcccaatagtgctggtcgt 2108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 14396 - 14464
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatg 191  Q
    ||||||||| |||||||||||||| ||  || |||||||||||||||||| ||||||||||||||||||    
T  14396 agagcctctccaagatccattgggccatatgttatcaggtttccgctatcgggccacctaccatttatg 14464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 5728 - 5802
Alignment:
Q  129 tcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaa 203  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||  |||||||| ||||||||  ||||||||||    
T  5728 tcttcaagatctattgggtcacctgctatcagattttcgctatcgagccacctatcatttatgtccacgaaccaa 5802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 3942 - 3995
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  3942 cctctccaagatccactgggccacctgctatcaggtttccgctatcgggccacc 3995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4586 - 4639
Alignment:
Q  127 cctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacc 180  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  4586 cctctccaagatccactgggccacctgctatcaggtttccgctatcgggccacc 4639  T

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Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 5748 - 5797
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatc 172  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  5748 agagcctcttcaaaatccattgggccacctgctatcaggtttccgttatc 5797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 14497 - 14597
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccg-ctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||| |||| |||||||||||||  |||||||||||||||||||| ||||| || |||| || |||||||  || ||||||| | ||||| |||||||||    
T  14497 agagtctctccaagatccattggaccacctgctatcaggtttccgcctatcgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcg 14596  T
Q  222 t 222  Q
    |    
T  14597 t 14597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 10831 - 10931
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccg-ctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||| |||| |||||||||||||  |||||||||||||||||||| ||||  || |||| || |||||||  || ||||||| | ||||| |||||||||    
T  10831 agagtctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcg 10930  T
Q  222 t 222  Q
    |    
T  10931 t 10931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 13190 - 13290
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccg-ctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggtcg 221  Q
    |||| |||| |||||||||||||  |||||||||||||||||||| ||||  || |||| || |||||||  || ||||||| | ||||| |||||||||    
T  13190 agagtctctccaagatccattggaccacctgctatcaggtttccgcctattgggtcacccactatttatgtccatgaaccaagcccaatagtgttggtcg 13289  T
Q  222 t 222  Q
    |    
T  13290 t 13290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 41197 - 41101
Alignment:
Q  123 agagcctcttcaagatccattgggtcacctgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaacacaataatgttggt 219  Q
    ||||||||| |||||| ||||||| |||||||||||| |||| |||||||   ||||| || |||||||  ||||||| |||| || || |||||||    
T  41197 agagcctctccaagattcattgggccacctgctatcaagtttgcgctatcgaaccacccactatttatgcccacgaactaaactcagtagtgttggt 41101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 87783 - 87733
Alignment:
Q  140 cattgggtcacctgctatcaggtttccgctatcaggccacctaccatttat 190  Q
    ||||||| ||||||||||||||||||| ||||| || |||| |||||||||    
T  87783 cattgggccacctgctatcaggtttccactatcgggtcacccaccatttat 87733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 2616 - 2669
Alignment:
Q  152 tgctatcaggtttccgctatcaggccacctaccatttatgatcacgaaccaaac 205  Q
    ||||||||||||||||||||| |||||||  |||||||||   |||||||||||    
T  2616 tgctatcaggtttccgctatcgggccaccccccatttatgtctacgaaccaaac 2669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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