View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_179 (Length: 240)

Name: NF15941_high_179
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_179
NF15941_high_179
[»] chr3 (1 HSPs)
chr3 (128-227)||(27605566-27605665)
[»] chr4 (1 HSPs)
chr4 (138-184)||(9150990-9151036)
[»] chr1 (1 HSPs)
chr1 (32-70)||(26807247-26807285)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 27605566 - 27605665
Alignment:
Q  128 atagtgaaacagaagtgaatcgaaaacgaccaaatcattctatttacattgattttattagattttatttctttaatgcaaaccaaatttatgccctatg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605566 atagtgaaacagaagtgaatcgaaaacgaccaaatcattctatttacattgattttattagattttatttctttaatgcaaaccaaatttatgccctatg 27605665  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 9151036 - 9150990
Alignment:
Q  138 agaagtgaatcgaaaacgaccaaatcattctatttacattgatttta 184  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||    
T  9151036 agaagtgaattgaaaacgacctaatcattctccttacattgatttta 9150990  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 26807285 - 26807247
Alignment:
Q  32 aagagtgttagtgatcaagacattgacctaattattttg 70  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  26807285 aagagtgttagtgaccaagacattgacctaactattttg 26807247  T

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