View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_180 (Length: 240)
Name: NF15941_high_180
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_180 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 5618007 - 5617787
Alignment:
| Q |
4 |
gagagagaagaattataatgaccatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaa |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5618007 |
gagaaagaagaattataatgaccatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaa |
5617908 |
T |
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| Q |
104 |
gaaggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccatccaactgcatgctcat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
5617907 |
gaaggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcat |
5617808 |
T |
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| Q |
204 |
caagcatggccttaacctcca |
224 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5617807 |
caagcatggccttaacctcca |
5617787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 21163294 - 21163074
Alignment:
| Q |
4 |
gagagagaagaattataatgaccatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaa |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21163294 |
gagaaagaagaattataatgaccatcctaaacctaaaaagccacaacctacataagtaaataaaatgttgctactcatacatagtgtgaaaaatggtcaa |
21163195 |
T |
|
| Q |
104 |
gaaggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccatccaactgcatgctcat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
21163194 |
gaaggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcat |
21163095 |
T |
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| Q |
204 |
caagcatggccttaacctcca |
224 |
Q |
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||||||||||||||||||||| |
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| T |
21163094 |
caagcatggccttaacctcca |
21163074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 39823512 - 39823616
Alignment:
| Q |
106 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaattcatcttctttcttcaatccccatccaactgcatgctcatca |
205 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
39823512 |
aggtaaccaagcagaagcaaaaacaacattatggcctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatca |
39823611 |
T |
|
| Q |
206 |
agcat |
210 |
Q |
| |
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||||| |
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|
| T |
39823612 |
agcat |
39823616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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