View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_186 (Length: 237)
Name: NF15941_high_186
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_186 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39784330 - 39784117
Alignment:
| Q |
1 |
atgatgcaatgtcaatgcctagaatctaaaaaactatacaaaattgcattgtataaaactctct-atccgtttaaaactttagagtaatagaaaaggttg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
39784330 |
atgatgcaatgtcaatgcctagaatctaaaaaactatacaaaattgcattgtataaaactctcttatccttttaaaactttagagtaatagaaaaggttg |
39784231 |
T |
|
| Q |
100 |
tctgcactagtctaacaaagtagaaattcatcatgaagagctgcaaaattaaattaaattaaataatataatgtatcagatgccaagaatgagagagaat |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39784230 |
tctgc----gtctaacaaagtagaaattcatcatgaagagctgcaaaattaaattaaat-----aatataatgtatcagatgccaagaatgagagagaat |
39784140 |
T |
|
| Q |
200 |
ataactataatgatgttgcatct |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39784139 |
ataactataatgatgttgcatct |
39784117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University