View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_213 (Length: 221)

Name: NF15941_high_213
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_213
NF15941_high_213
[»] chr4 (10 HSPs)
chr4 (80-213)||(6748725-6748858)
chr4 (86-220)||(6811702-6811836)
chr4 (14-85)||(6738296-6738367)
chr4 (151-220)||(6626886-6626955)
chr4 (148-212)||(6502383-6502447)
chr4 (150-214)||(6503632-6503696)
chr4 (142-214)||(6792312-6792384)
chr4 (151-214)||(6647009-6647072)
chr4 (148-214)||(6665419-6665485)
chr4 (166-214)||(6832300-6832348)
[»] scaffold0729 (1 HSPs)
scaffold0729 (142-214)||(6245-6317)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 6748725 - 6748858
Alignment:
Q  80 tactctagtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaa 179  Q
    ||||||||||||||||||||||||  ||||||| ||  |||||| ||||| |||||||||| ||||| || |  |||| ||| ||| |||||||||||||    
T  6748725 tactctagtttctttacaagagaaacttctttttgaactcgacacagcaactaaaatagatgtatctacaatgcaatctggagaagagattttaaaagaa 6748824  T
Q  180 agacttcagcataaaagggtacttcttatacttg 213  Q
    |||||||| ||||||| ||||||| |||||||||    
T  6748825 agacttcaacataaaaaggtactttttatacttg 6748858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 6811702 - 6811836
Alignment:
Q  86 agtttctttacaagagaatattcttttagatatcgacaaagcaagtaaaatagatatatctgcagttgaatcaggaaaagtgattttaaaagaaagactt 185  Q
    |||||||||||||| |||  ||||||||||| |||||||||||| ||||| | | ||  || || ||||||  ||||||| |||||||||||||||| ||    
T  6811702 agtttctttacaagcgaaacttcttttagatgtcgacaaagcaactaaaacaaagattcctacaattgaattgggaaaagagattttaaaagaaagattt 6811801  T
Q  186 cagcataaaagggtacttcttatacttgatgatgt 220  Q
    |  |||||||||||||||||| ||||||| |||||    
T  6811802 cgacataaaagggtacttcttgtacttgacgatgt 6811836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 6738296 - 6738367
Alignment:
Q  14 ttatactcagattgggaacttttttgaggacaaatgctacctagaatatgttaagggagcatttcatactct 85  Q
    |||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  6738296 ttatactcggattgggaacttttttgaggacaaatgctgcctataatatgtcaagggagcatttcgtactct 6738367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 6626955 - 6626886
Alignment:
Q  151 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttgatgatgt 220  Q
    |||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||||| |||||    
T  6626955 ttgaatcagggaaagtgattttaaaagaaagactccgtcataaaagtgtacttcttatacttgacgatgt 6626886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 6502447 - 6502383
Alignment:
Q  148 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatactt 212  Q
    ||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||| |||||    
T  6502447 cagttgaatcaggaagaattattttaaaagaaagacttcaacataaaagggtacttcttctactt 6502383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 6503696 - 6503632
Alignment:
Q  150 gttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    ||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  6503696 gttgaatcaggaagagttattttaaaagaaaggcttcaacataaaagggtacttcttctacttga 6503632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 6792312 - 6792384
Alignment:
Q  142 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||    
T  6792312 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttga 6792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 6647009 - 6647072
Alignment:
Q  151 ttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    ||||||||||||||   ||||||||||||| ||||||  ||||||||||||||||| |||||||    
T  6647009 ttgaatcaggaaaaaatattttaaaagaaaaacttcataataaaagggtacttcttgtacttga 6647072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 6665419 - 6665485
Alignment:
Q  148 cagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    ||||| |||||||||  || ||||||||||| || ||||| |||||||||||||||||| |||||||    
T  6665419 cagttaaatcaggaagcgttattttaaaagacaggcttcaacataaaagggtacttcttctacttga 6665485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 6832300 - 6832348
Alignment:
Q  166 tgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    |||||| |||||||| |||||  ||||||||||||||||||||||||||    
T  6832300 tgatttcaaaagaaaaacttcgacataaaagggtacttcttatacttga 6832348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 6317 - 6245
Alignment:
Q  142 tatctgcagttgaatcaggaaaagtgattttaaaagaaagacttcagcataaaagggtacttcttatacttga 214  Q
    ||||| || |||||||||||| || ||| |||||| |||| ||||| |||||||||||||||||| |||||||    
T  6317 tatctacaattgaatcaggaacagagatgttaaaacaaagccttcaacataaaagggtacttcttgtacttga 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University