View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_216 (Length: 217)
Name: NF15941_high_216
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_216 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 23818421 - 23818261
Alignment:
| Q |
11 |
aagaaaatgaataccggaattcatcgggccttcggctttgatttggttgcccaaacaaactcccatggcagaaacaatattaattcccatagccttgttt |
110 |
Q |
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| T |
23818421 |
aagaatatgaataccggaattaatcgggccttcggctttgatttggttgcccaaacaaactcccatggcagaaacaatattaattcccatagccttgttt |
23818322 |
T |
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| Q |
111 |
cctatagatcacaacaaaatagaagggaaggtcaagtcctgcaaaaaaatattcatgattat |
172 |
Q |
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| T |
23818321 |
cctatagatcacaacaaaatagaagggaaggtcaagtcctgcaa-aaaatattcatgattat |
23818261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 23831566 - 23831430
Alignment:
| Q |
11 |
aagaaaatgaataccggaattcatcgggccttcggctttgatttggttgcccaaacaaactcccatggcagaaacaatattaattcccatagccttgttt |
110 |
Q |
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| T |
23831566 |
aagaatatgaatacctgaattagttggaccttcagctttgatttggccgcccaaacaaactcccatggcagagacaatattaattcccatagctttgttt |
23831467 |
T |
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| Q |
111 |
cctatagatcacaacaaaatagaagggaaggtcaagtcc |
149 |
Q |
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| T |
23831466 |
caaatagataaca--aaaaaagaagataaggtcaagtcc |
23831430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 23823674 - 23823547
Alignment:
| Q |
17 |
atgaataccggaattcatcgggccttcggctttgatttggttgcccaaacaaactcccatggcagaaacaatattaattcccatagccttgtttcctata |
116 |
Q |
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| T |
23823674 |
atgaatacctgaattctttgggccttcagctttgacttggccacctaaacaaactcccatagctgaaacaatactaattcccatagctttgttgcctata |
23823575 |
T |
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| Q |
117 |
gatcacaacaaaatagaagggaaggtca |
144 |
Q |
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| T |
23823574 |
gatcacaacaacaaagtagagaaggtca |
23823547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 23827542 - 23827408
Alignment:
| Q |
11 |
aagaaaatgaataccggaattcatcgggccttcggctttgatttggttgcccaaacaaactcccatggcagaaacaatattaattcccatagccttgttt |
110 |
Q |
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||||| ||||||||| ||||| || |||| ||| ||||||| | | ||| ||||| ||||||||||| ||||||||| ||||||||||| | ||||| |
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| T |
23827542 |
aagaatatgaatacctgaattaattgggctttcagctttgaccttgccgcctaaacacactcccatggctgaaacaatactaattcccataactttgttg |
23827443 |
T |
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| Q |
111 |
cctatagatcacaacaaaatagaagggaaggtcaa |
145 |
Q |
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| T |
23827442 |
cctgtagatcacaacaacaaagcagagaaggtcaa |
23827408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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