View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_218 (Length: 214)

Name: NF15941_high_218
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_218
NF15941_high_218
[»] chr7 (6 HSPs)
chr7 (18-197)||(5289436-5289615)
chr7 (18-197)||(5310601-5310780)
chr7 (18-196)||(5315316-5315494)
chr7 (18-197)||(5284512-5284691)
chr7 (18-197)||(5302700-5302879)
chr7 (18-196)||(46706727-46706905)
[»] chr5 (7 HSPs)
chr5 (18-197)||(1492372-1492551)
chr5 (18-197)||(1505181-1505360)
chr5 (18-197)||(1478203-1478382)
chr5 (18-196)||(1482398-1482576)
chr5 (18-197)||(1509328-1509507)
chr5 (30-194)||(1499447-1499611)
chr5 (108-196)||(1486875-1486963)
[»] chr1 (3 HSPs)
chr1 (18-196)||(44141406-44141584)
chr1 (18-196)||(44128779-44128957)
chr1 (18-196)||(44132984-44133162)
[»] chr2 (1 HSPs)
chr2 (27-197)||(24163538-24163708)
[»] chr3 (3 HSPs)
chr3 (36-197)||(37859121-37859282)
chr3 (18-197)||(37863129-37863308)
chr3 (128-178)||(39030294-39030344)
[»] chr8 (1 HSPs)
chr8 (30-178)||(35251034-35251182)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5289436 - 5289615
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5289436 acaataagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 5289535  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5289536 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 5289615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5310780 - 5310601
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5310780 acaataagagcagcagctccatctccaaacaatgcttgcccaacaaggctgtccaagtgagtatcactggggccacgaaatgtgacagcggtgacttcag 5310681  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5310680 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 5310601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 5315494 - 5315316
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||    
T  5315494 acaataagagcagccgctccatctccaaatagtgcttgtccaacaaggctgtctaagtgagtatcactaggaccacgaaatgtgacagcggtgacttcag 5315395  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5315394 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccacctgcaaa 5315316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5284691 - 5284512
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||    
T  5284691 acaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtctaagtgagtatcgctagggccacgaaatgtgacagcggtgacttcag 5284592  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  5284591 aacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaa 5284512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 5302879 - 5302700
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || |    
T  5302879 acaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtccaagtgagtatcactagggccacgaaatgtgacagcggtgacctctg 5302780  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5302779 aacatacaaccaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaa 5302700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 46706727 - 46706905
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||    
T  46706727 acaataagtgcagcagctctgactccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactagggccgcggaatgtgactgcagtgacttcag 46706826  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  46706827 aacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctcctgcaaa 46706905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1492551 - 1492372
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||||||    
T  1492551 acaataagtgcagctgctccatctccaaatagtgcttgtccaacaagactgtccaagtgtgtatcactgggaccacgaaatgtgactgcagtgacttcag 1492452  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  1492451 aacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccacctgcaaaa 1492372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1505360 - 1505181
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| |    
T  1505360 acaattagtgcagcagctccatctccaaatagagcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcgg 1505261  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  1505260 aacagacaaccaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaa 1505181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1478382 - 1478203
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||    
T  1478382 acaatgagtgcagcagcaccatctccaaatagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcag 1478283  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  1478282 aacaaacaaccaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaa 1478203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 1482576 - 1482398
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||    
T  1482576 acaatgagtgcagcagctccatctccaaagagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcag 1482477  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    |||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |||||||||||    
T  1482476 aacaaacaaccaacacacgagcacctttattattctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaa 1482398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1509507 - 1509328
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| | |||||| |||||||| |||||||| ||||||||||  |||||||  |||||||| ||  |||||| ||    
T  1509507 acaatgagtgcagcagctccatctccaaataatgcttgtccaacaagactgtccaaatgagtatcaccagggccacaaaatgtgactgcaatgactttag 1509408  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||| || |||||| ||||||| |||||||||||||||    
T  1509407 aacaaacaaccaacacacgagcatcttggttattttcagccaaatcctttgccaaatgaagcacagtgccacctgcaaaa 1509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 1499611 - 1499447
Alignment:
Q  30 gcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaacca 129  Q
    ||||||||||||||||| | |||||| ||||||||  |||  | |||||||| ||| || ||||  |||| ||  || |||| |||||||||||||||||    
T  1499611 gcagctccatctccaaatattgcttgtccaacaagtttgtgtaggtgagtattactaggtccacaaaatgagattgcagtgatttcagaacaaacaacca 1499512  T
Q  130 acacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgca 194  Q
    ||||||||||||||||||| |||||||| || || || ||||||||||| || || |||||||||    
T  1499511 acacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgca 1499447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 1486963 - 1486875
Alignment:
Q  108 gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    |||||||||||||| |  ||||||||| ||||| |||| |||||||||||||| || |||||| |||| || || ||||| ||||||||    
T  1486963 gtgacttcagaacatattaccaacacaagagcatctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaa 1486875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 44141584 - 44141406
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||    
T  44141584 acaattagtgcagcagctccatctccaaatagtgcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcag 44141485  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||    
T  44141484 aacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaa 44141406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 44128957 - 44128779
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||    
T  44128957 acaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcag 44128858  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||    
T  44128857 aacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaa 44128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 44133162 - 44132984
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||| || |||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||    
T  44133162 acaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcag 44133063  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaa 196  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||    
T  44133062 aacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaa 44132984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 24163538 - 24163708
Alignment:
Q  27 gcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaa 126  Q
    |||||||||||||||||||| || ||||| ||||||||| |||| ||||||||||| || || ||||  |||||||  ||||| ||||||||||||||||    
T  24163538 gcagcagctccatctccaaatagagcttgtccaacaaggttgtctaagtgagtatcgcttggtccacaaaatgtgattgcggtaacttcagaacaaacaa 24163637  T
Q  127 ccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  24163638 ccaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccacctgcaaaa 24163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 37859121 - 37859282
Alignment:
Q  36 ccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacac 135  Q
    ||||||||||||| ||||||||| |||||||| || |  ||||| |||||||| |||||||| || || || || |  || |||||||| ||||||||||    
T  37859121 ccatctccaaacaatgcttgccccacaaggctatcaagatgagtgtcactgggtccacggaaagtaactgcagttatctctgaacaaactaccaacacac 37859220  T
Q  136 gagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||    
T  37859221 gagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccaccagcaaaa 37859282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 37863129 - 37863308
Alignment:
Q  18 acaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcag 117  Q
    ||||||| ||| || || ||||||||||||| ||| ||||| ||||| || || |  ||||||||||| || |||||||| || || || ||||  || |    
T  37863129 acaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtgatctccg 37863228  T
Q  118 aacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaa 197  Q
    ||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  37863229 aacaaaccaccaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaa 37863308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 39030344 - 39030294
Alignment:
Q  128 caacacacgagcacctttgttgttctcagccaaatctttggccaaacgaag 178  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  39030344 caacacacgggcacctttgttgttctcagccaaatctttagccaagcgaag 39030294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 35251182 - 35251034
Alignment:
Q  30 gcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaacca 129  Q
    ||||| ||||||||||||| |||||| || || || || || |  || || ||||| |||||||| || || || || ||||  || |||||||| || |    
T  35251182 gcagcgccatctccaaacaatgcttgtcccacgagactatcaagatgggtgtcactagggccacgaaaagtcactgcagtgatctctgaacaaaccacaa 35251083  T
Q  130 acacacgagcacctttgttgttctcagccaaatctttggccaaacgaag 178  Q
      |||||||||||||| |||||||||||||||||||| |||||||||||    
T  35251082 gaacacgagcacctttattgttctcagccaaatctttagccaaacgaag 35251034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University