View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_219 (Length: 213)
Name: NF15941_high_219
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_219 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 43047502 - 43047687
Alignment:
| Q |
13 |
gaaatgaagtaactgaatttttgtcttgtcnnnnnnnnccccctaaactgttgaagaaagaaaaagaaaacgctgtgaaccgttacacgtgttttgtgag |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43047502 |
gaaaagaagtaactgaatttttgtcttgtcttttttttccccctaaactgttgaagaaagaaaaagaaaacgctgtgaaccgttacacgtgttttgtgag |
43047601 |
T |
|
| Q |
113 |
ttaattaaaatgagggatatttttacggatttaaggattaaagatgagttttttgaaatgaaatttgaaaaattgaagttggtttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43047602 |
ttaattaaaatgagggatatttttacggatttaaggattaaagatgagttttttgaaatgaaatttgaaaaattgaagttggtttt |
43047687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University