View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_221 (Length: 205)

Name: NF15941_high_221
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_221
NF15941_high_221
[»] chr5 (24 HSPs)
chr5 (52-187)||(11496160-11496295)
chr5 (52-187)||(11533070-11533205)
chr5 (52-187)||(11563421-11563556)
chr5 (52-187)||(11503487-11503622)
chr5 (52-187)||(11510881-11511016)
chr5 (52-187)||(11518257-11518392)
chr5 (52-187)||(11525662-11525797)
chr5 (52-187)||(11540514-11540649)
chr5 (17-54)||(11496324-11496361)
chr5 (17-54)||(11503651-11503688)
chr5 (17-54)||(11511045-11511082)
chr5 (17-54)||(11518421-11518458)
chr5 (17-54)||(11525826-11525863)
chr5 (17-54)||(11533234-11533271)
chr5 (17-54)||(11540678-11540715)
chr5 (17-54)||(11563585-11563622)
chr5 (127-162)||(11496288-11496323)
chr5 (127-162)||(11503615-11503650)
chr5 (127-162)||(11511009-11511044)
chr5 (127-162)||(11518385-11518420)
chr5 (127-162)||(11525790-11525825)
chr5 (127-162)||(11533198-11533233)
chr5 (127-162)||(11540642-11540677)
chr5 (127-162)||(11563549-11563584)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11496295 - 11496160
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11496295 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11496196  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11496195 aacaggaagagtgactaacgtgaccaacccttttgt 11496160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11533205 - 11533070
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11533205 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11533106  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11533105 aacaggaagagtgactaacgtgaccaacccttttgt 11533070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11563556 - 11563421
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11563556 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11563457  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11563456 aacaggaagagtgactaacgtgaccaacccttttgt 11563421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11503622 - 11503487
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503622 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11503523  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11503522 aacaggaagagtgactaacgtgaccaacccttttgt 11503487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11511016 - 11510881
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511016 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11510917  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11510916 aacaggaagagtgactaacgtgaccaacccttttgt 11510881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11518392 - 11518257
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11518392 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11518293  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11518292 aacaggaagagtgactaacgtgaccaacccttttgt 11518257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11525797 - 11525662
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525797 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11525698  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11525697 aacaggaagagtgactaacgtgaccaacccttttgt 11525662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 11540649 - 11540514
Alignment:
Q  52 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11540649 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcgtcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttcattggtt 11540550  T
Q  152 aacaggaagagtgactaacgtgaccaacccttttgt 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  11540549 aacaggaagagtgactaacgtgaccaacccttttgt 11540514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11496361 - 11496324
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11496361 aatatatctacaaatattatcataatcagatgcaaagg 11496324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11503688 - 11503651
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11503688 aatatatctacaaatattatcataatcagatgcaaagg 11503651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11511082 - 11511045
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11511082 aatatatctacaaatattatcataatcagatgcaaagg 11511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11518458 - 11518421
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11518458 aatatatctacaaatattatcataatcagatgcaaagg 11518421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11525863 - 11525826
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11525863 aatatatctacaaatattatcataatcagatgcaaagg 11525826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11533271 - 11533234
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11533271 aatatatctacaaatattatcataatcagatgcaaagg 11533234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11540715 - 11540678
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11540715 aatatatctacaaatattatcataatcagatgcaaagg 11540678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 11563622 - 11563585
Alignment:
Q  17 aatatatctataaatattatcataatcagatgcaaagg 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11563622 aatatatctacaaatattatcataatcagatgcaaagg 11563585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11496323 - 11496288
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11496323 gcttgtcaaccttatttaattgtttaacaggaagag 11496288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11503650 - 11503615
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11503650 gcttgtcaaccttatttaattgtttaacaggaagag 11503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11511044 - 11511009
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11511044 gcttgtcaaccttatttaattgtttaacaggaagag 11511009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11518420 - 11518385
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11518420 gcttgtcaaccttatttaattgtttaacaggaagag 11518385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11525825 - 11525790
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11525825 gcttgtcaaccttatttaattgtttaacaggaagag 11525790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11533233 - 11533198
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11533233 gcttgtcaaccttatttaattgtttaacaggaagag 11533198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11540677 - 11540642
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11540677 gcttgtcaaccttatttaattgtttaacaggaagag 11540642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 11563584 - 11563549
Alignment:
Q  127 gcttgtcaaccttatttaattggttaacaggaagag 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  11563584 gcttgtcaaccttatttaattgtttaacaggaagag 11563549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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