View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_223 (Length: 204)
Name: NF15941_high_223
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_223 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 31287468 - 31287299
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattactctcaaata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31287468 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtgatggatgaaaagaagttgcaagaaatgagtcagtattactctcaaata |
31287369 |
T |
|
| Q |
119 |
gatgaaaacagcaaggtaagtaagtcacaaagtcggagtttatcaattaaagatcaatgtactggttcat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31287368 |
gatgaaaacagcaaggtaagtaagtcacaaagtcggagtttatcaattaaagatcaatgtactggttcat |
31287299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 31381333 - 31381165
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattactctcaaata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| | ||| |||||| ||||||||||||||||| |
|
|
| T |
31381333 |
gcttgaaggaaggactgtggttccagaatttgtttcagattcaagtgaagtaatggatgaacagaaacttgaagtaatgaggcagtattactctcaaat- |
31381235 |
T |
|
| Q |
119 |
gatgaaaacagcaaggtaagtaagtcacaaagtcggagtttatcaattaaagatcaatgtactggttcatct |
190 |
Q |
| |
|
||||| | |||||| ||||||||||||||||||||||||||| | | ||||||||||||| ||||||| |
|
|
| T |
31381234 |
--ggaaaaaaataaggtatgtaagtcacaaagtcggagtttatcaagtgatgatcaatgtactgcttcatct |
31381165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 31370664 - 31370569
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattactctca |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||| ||| |||||| |||||||||||||| |
|
|
| T |
31370664 |
gcttgaaggaaggactgttgttccagaatttgtttcagattcaaatgaagtaatggataaacagaagttggaagtaatgaggcagtattactctca |
31370569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31302051 - 31301960
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| || ||| | |||| |||||||||| |
|
|
| T |
31302051 |
gcttgaaggaaggactgtggttccagaatttgtgtcagattcaagtgaagtaatggatgaaaagaacatggaagtattgaggcagtattact |
31301960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31250580 - 31250489
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattact |
110 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||| || |||||| ||| |||||| |||||||||| |
|
|
| T |
31250580 |
gcttgaaggaaataccgtggttccagaatttgtttcagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagacagtattact |
31250489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31312544 - 31312453
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattact |
110 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||| |||| |||||||||||||||||||||| || ||| |||||| |||||||||| |
|
|
| T |
31312544 |
gcttgaaggaagaaatgtggttccagaatttgtgccagattcaagtgaagtaatggatgaaaagaagatgaaagtaatgaggcagtattact |
31312453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 31277964 - 31277866
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattactctcaaat |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | |||| ||||| ||||||||| |||||||| || |||||| |||||||||||| |||| |
|
|
| T |
31277964 |
gcttgaaggaatgactgtggttccagaatttgtttcatattcaagagaagtgatggatgaacagaagttggaaataatgaggcagtattactctaaaat |
31277866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 31241662 - 31241573
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtatta |
108 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||| || |||||| ||| |||||| ||||||| |
|
|
| T |
31241662 |
gcttgaaggaaataccgtggttccagaatttgtttcagattcaagtgaagtaatggatgagaaaaagttggaagcaatgagaaagtatta |
31241573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 31352560 - 31352469
Alignment:
| Q |
19 |
gcttgaaggaaggactgtggttccagaatttgtttcagaatcaaatgaagtaatggatgaaaagaagttgcaagaaatgagtcagtattact |
110 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||| |||| | |||||||||||| || ||| || |||||||||| |||||||||| |
|
|
| T |
31352560 |
gcttgaaggaagaaccgtggttccagaatttgtgccagattcaagtaaagtaatggatggcaataagatggaagaaatgagacagtattact |
31352469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University