View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_24 (Length: 473)
Name: NF15941_high_24
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 32606561 - 32606115
Alignment:
| Q |
10 |
atcaatcacatggcgaatcaccacaataacccccaataccctcctatacgcaaattccagacaaaacataggggcataagtgtacttgcataaaaacatg |
109 |
Q |
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| T |
32606561 |
atcaatcacatggcgaatcaccacaataacccccaataccctcctatacgcaaattccagacaaaacataggggcataaatgtacttgcataaaaacatg |
32606462 |
T |
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| Q |
110 |
tcgtgttctactttgtcacgtaaaggtctaaaacagtaag----attctctannnnnnnnccactaaaataaacggataaatgaaagcaaaaagaaaatg |
205 |
Q |
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| T |
32606461 |
tcgtgttctactttgtcacgtaaaggtctaaaacagtaagtaagattctctattttttt-ccactaaaataaacggataaatgaaaggaaaaaaaaaa-g |
32606364 |
T |
|
| Q |
206 |
tataggtacctgctgatgtttttgggttaaaactccaacgtcataaaccggggtaagatccggtttaaacaacccataattctgctccgaaatagtaggt |
305 |
Q |
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| T |
32606363 |
tatttgtacctgctgatgtttttgggttaaaactccaacgtcataaaccggggtaagatccggtttaaacaacccataattctgctccgaaatagtaggt |
32606264 |
T |
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| Q |
306 |
ttaagattctcattaaacaatgagaaaatataagtctcaaaagtcctattaggcatcaaaggagttcctttcccagaattaacatgcttaataagattcc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32606263 |
ttaagattctcattaaacaatgagaaaatataagtctcaaaagtcctattaggcatcaaaggagttcctttcccagaattaacatgcttaataagattcc |
32606164 |
T |
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| Q |
406 |
cattataagaaactgcattttccaaactaacaccgggttgacccgggtc |
454 |
Q |
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| T |
32606163 |
cattataagaaactgcattttccaaactaacaccgggttgacccgggtc |
32606115 |
T |
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