View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_26 (Length: 470)
Name: NF15941_high_26
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 41270249 - 41270719
Alignment:
| Q |
1 |
cccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaa |
100 |
Q |
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| T |
41270249 |
cccgaggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaa |
41270348 |
T |
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| Q |
101 |
gctgattacagataccaaccatttgttgcaaaatatacaaatttcaaagctagtggttgcacagcctatgcacctcgttggtgccatccagtttcagcat |
200 |
Q |
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| T |
41270349 |
gctgattacagataccaaccatttgttgcaaaatatacaaatttcaaagctagtggttgcacagcctatgcacctcgttggtgccatccagtttcagcat |
41270448 |
T |
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| Q |
201 |
caccatatggttctggtggattgaactcacaacaaaatagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaag |
300 |
Q |
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| T |
41270449 |
caccatatggttctggtggattgaactcacaacaaaatagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaag |
41270548 |
T |
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| Q |
301 |
agatcatagactaacacctgaatgttcgggttaaataaagattaaaaacttgcaaatttggggggtgtcccaaaaaatactgttctcttgtgatctattt |
400 |
Q |
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| T |
41270549 |
agatcatagactaacacctgaatgttcgggttaaataaagattaaaaacttgcaaatttggggggtgtcccaaaaaatactgttctcttgtgatctattt |
41270648 |
T |
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| Q |
401 |
tgtttgtttgtttgagaaagttttctttttacattgtgggggtgacatgaaatggga-ccctatcacttga |
470 |
Q |
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| T |
41270649 |
tgtttgtttgtttgagaaagttttctttttacattgtgggggtgacatgaaatgggacccctatcacttga |
41270719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 27684259 - 27683928
Alignment:
| Q |
5 |
aggaagagtgacacaacatttcctattagaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctg |
104 |
Q |
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||||||||||| |||||||||| | |||||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27684259 |
aggaagagtgatgcaacatttccactaagaccaatgtgggtttatgggtctatttgggatgcttcatcatgggcaacagaagatggaaaatacaaagctg |
27684160 |
T |
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| Q |
105 |
attacagataccaaccatttgttgcaaaatatacaaatttcaaagctagtggttgcacagcctatgcacctcgttggtgccatccagtttcagcatcacc |
204 |
Q |
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| T |
27684159 |
attacaagtaccaaccttttgttgcaaagtacacaaacttcaaggctagtggttgcacagcctatgcgtcgcgttggtgtcgtccggccacggcctcgcc |
27684060 |
T |
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| Q |
205 |
atatggttctggtggattgaactcacaacaaaatagggctatgagttgggtgcaaagataccatatggtttataattattgtaaagaccccaaaagagat |
304 |
Q |
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| T |
27684059 |
gtatcggtccggtgggttgacaagacaacaacattggtctatgagttgggttcaaagacaccacatggtttataactattgccaagatcctaaaagggac |
27683960 |
T |
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| Q |
305 |
catagactaacacctgaatgttcgggttaaat |
336 |
Q |
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| T |
27683959 |
catagactaacacctgaatgttggggttaaat |
27683928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 21083849 - 21083753
Alignment:
| Q |
32 |
agaccaatgtggctttatggttcaatatgggatgcttcatcatgggcaacagaagatggaaaatacaaagctgattacagataccaaccatttgttg |
128 |
Q |
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| T |
21083849 |
agaccaatgtatctctatggatcaatttgggatgcatcttcttgggcaacagaagatggaaaatataaagctgattataaataccaaccctttgttg |
21083753 |
T |
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