View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_3 (Length: 608)

Name: NF15941_high_3
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_3
NF15941_high_3
[»] chr5 (4 HSPs)
chr5 (108-534)||(33827438-33827872)
chr5 (14-80)||(33827896-33827962)
chr5 (534-592)||(33826321-33826379)
chr5 (399-473)||(17895633-17895707)
[»] chr1 (4 HSPs)
chr1 (218-516)||(47833768-47834074)
chr1 (390-490)||(2079112-2079212)
chr1 (320-378)||(26310395-26310451)
chr1 (401-478)||(25588693-25588769)
[»] chr3 (7 HSPs)
chr3 (233-485)||(53833815-53834075)
chr3 (218-474)||(53837398-53837662)
chr3 (397-485)||(24734346-24734434)
chr3 (383-478)||(16196745-16196840)
chr3 (390-478)||(3083767-3083853)
chr3 (321-378)||(7909524-7909579)
chr3 (401-479)||(7910323-7910401)
[»] chr2 (3 HSPs)
chr2 (240-493)||(27648335-27648594)
chr2 (321-524)||(44686131-44686342)
chr2 (238-493)||(36338824-36339086)
[»] chr6 (3 HSPs)
chr6 (225-469)||(353012-353264)
chr6 (332-485)||(12273581-12273740)
chr6 (389-513)||(14802742-14802865)
[»] chr4 (2 HSPs)
chr4 (296-493)||(54572855-54573047)
chr4 (219-274)||(54573488-54573544)
[»] chr8 (2 HSPs)
chr8 (388-493)||(15051497-15051602)
chr8 (335-478)||(24542657-24542808)
[»] chr7 (1 HSPs)
chr7 (399-468)||(4648282-4648351)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 108 - 534
Target Start/End: Complemental strand, 33827872 - 33827438
Alignment:
Q  108 aaatatatgtgctcatgagccttgaatgaatcacacatttaccaccatcaccatgaattgaattcatcaaattaattagcacccttatcaccattaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33827872 aaatatatgtgctcatgagccttgaatgaatcacacatttaccaccatcaccatgaattgaattcatcaaattaattagcacccttatcaccattaaagt 33827773  T
Q  208 tttgtgaaagttgtaggaaaaattagacagagaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataataga 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33827772 tttgtgaaagttgtaggaaaaattagacagagaaatattataaggtaataagtaataagaaatattagcatcaaattaatagaactctaaatataataga 33827673  T
Q  308 atagagaacaagtaaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgatag 399  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||||    
T  33827672 atagagaacaagtaaatttatcggtcattgactgaggcgtgcacgaagcactgggcttaagagtattttgccaccccggatgaatcacctgatgcgatag 33827573  T
Q  400 gtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctcttgata 499  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||| |||  |||||||||||||||||  |    
T  33827572 gtctcatagataatactctccaggatacaacaatcgcttcttgctagcaccgcacgtggattagcaaggtctcaagaatcacttatggatgctcttggga 33827473  T
Q  500 acttataatttattattagtgactataatgaaaat 534  Q
    |||||||||||||||||||||||||||||||||||    
T  33827472 acttataatttattattagtgactataatgaaaat 33827438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 33827962 - 33827896
Alignment:
Q  14 ataatactacacataaatcaaaatatatcgaagcaggagcagccccatgtgttaggccttggcccct 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33827962 ataatactacacataaatcaaaatatatcgaagcaggagcagccccatgtgttaggccttggcccct 33827896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 534 - 592
Target Start/End: Complemental strand, 33826379 - 33826321
Alignment:
Q  534 taagagatgaaagaagacattgtacttcagcaacctatattattttctcctcttttaca 592  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33826379 taagagatgaaagaagacattgtaattcagcaacctatattattttctcctcttttaca 33826321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 17895707 - 17895633
Alignment:
Q  399 ggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctca 473  Q
    ||||||| ||||| |||||||||||||||||||||| |||||  |||||||||||| || | |||||||||||||    
T  17895707 ggtctcacagctagtactctccaggatacaacaatcacttcttgctaacaccgcacatgaactagcaaggtctca 17895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 218 - 516
Target Start/End: Complemental strand, 47834074 - 47833768
Alignment:
Q  218 ttgtaggaaaaattagacagagaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaaca 317  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47834074 ttgtaggaaaaagtagacatagaattattataaggtaataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaaca 47833975  T
Q  318 agtaaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagc 409  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||| ||        |||||||| ||||||| ||||||||||||||    
T  47833974 agtaaacttatcgattattgactgaggcatgcatgaagcattgggcttaagagtatttcgccaccccggatgaatcatccgatgcaataggtctcatagc 47833875  T
Q  410 taatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctcttgataacttataatt 509  Q
    ||||||||||||| |||||||| ||||||||  ||| |||||||||||||||| | ||||||||| ||| |||||||||||||| ||  |||||||||||    
T  47833874 taatactctccagaatacaacagtcgcttcttgctagcaccgcacgtggattaacgaggtctcagaaaccacttatggatgctcatgggaacttataatt 47833775  T
Q  510 tattatt 516  Q
    | |||||    
T  47833774 tgttatt 47833768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 390 - 490
Target Start/End: Original strand, 2079112 - 2079212
Alignment:
Q  390 gatgcgataggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggat 489  Q
    |||||| | |||||||||||||||| |||||||||||||||| || | ||| |||||||||||||||  ||||||||||||||| |||| |||| |||||    
T  2079112 gatgcggttggtctcatagctaatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaaccacttttggat 2079211  T
Q  490 g 490  Q
    |    
T  2079212 g 2079212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 26310395 - 26310451
Alignment:
Q  320 taaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc 378  Q
    ||||||||||| |||||||||||||| ||  ||| ||||| ||||||||||||||||||    
T  26310395 taaacttatcgattattgactgaggcttg--cgatgcactaggcttaagagtattttgc 26310451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 25588769 - 25588693
Alignment:
Q  401 tctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaac 478  Q
    ||||||||||| |||||||||| ||||| |  || |||||  ||| ||||||||||| ||||||||||||||| ||||    
T  25588769 tctcatagctagtactctccagaataca-cggtcacttcttgctagcaccgcacgtgaattagcaaggtctcatgaac 25588693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 233 - 485
Target Start/End: Original strand, 53833815 - 53834075
Alignment:
Q  233 gacagagaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaacttatcggt 332  Q
    |||| |||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |    
T  53833815 gacatagaattattataaggtaataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgat 53833914  T
Q  333 tattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagctaatactctccagga 424  Q
    |||||  ||||||||||| ||||||||||||| |||||||||||||        || ||| ||||||||||||||||||||||||||||||||| |||||    
T  53833915 tattggttgaggcgtgcatgaagcactgggctgaagagtattttgccatcccggataaataacccgatgcgataggtctcatagctaatactctgcagga 53834014  T
Q  425 tacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttat 485  Q
    |||||||||| |||||  ||| ||||||| ||| |||||||||||||||||||| ||||||    
T  53834015 tacaacaatcacttcttcctagcaccgcatgtgaattagcaaggtctcaggaaccacttat 53834075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 218 - 474
Target Start/End: Original strand, 53837398 - 53837662
Alignment:
Q  218 ttgtaggaaaaattagacagagaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaaca 317  Q
    |||||||| ||| |||||| | |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53837398 ttgtaggagaaagtagacataaaattattataaggtaataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaaca 53837497  T
Q  318 agtaaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagc 409  Q
    ||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||| ||        |||||||| |||||||||||| ||||||||     
T  53837498 agtaaacttatcgattattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggatgaatcatccgatgcgatagatctcatagt 53837597  T
Q  410 taatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcag 474  Q
    ||||||||| ||||||||||||||| ||| |  ||| |||||||  || ||||||||||||||||    
T  53837598 taatactctgcaggatacaacaatcactttttgctagcaccgcatatgaattagcaaggtctcag 53837662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 24734346 - 24734434
Alignment:
Q  397 taggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttat 485  Q
    ||||||||||||||||||||||||||||||||||| || | ||| |||| ||||||| ||| |||||||||||||||| ||| ||||||    
T  24734346 taggtctcatagctaatactctccaggatacaacagtcacatcttactagcaccgcatgtgaattagcaaggtctcagaaacaacttat 24734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 478
Target Start/End: Original strand, 16196745 - 16196840
Alignment:
Q  383 atcacccgatgcgataggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaac 478  Q
    |||| |||||||| | ||| ||||||||| |||| |||| |||||||||||| |||||  ||| ||||||| ||| |||| |||||||||| ||||    
T  16196745 atcatccgatgcggttggtttcatagctagtactttccatgatacaacaatcacttcttgctagcaccgcatgtgaattaacaaggtctcatgaac 16196840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 3083853 - 3083767
Alignment:
Q  390 gatgcgataggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaac 478  Q
    ||||||||||||||||||||||||||||| ||| ||||| || || |||||  ||| ||||||| ||| ||  ||||||||||| ||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagcaccgcatgtgaat--gcaaggtctcatgaac 3083767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 7909524 - 7909579
Alignment:
Q  321 aaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc 378  Q
    |||||||| | |||||||||||||||||||  | ||| ||||||||||||||||||||    
T  7909524 aaacttattgattattgactgaggcgtgca--atgcattgggcttaagagtattttgc 7909579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 479
Target Start/End: Original strand, 7910323 - 7910401
Alignment:
Q  401 tctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaact 479  Q
    |||||| |||| |||||| |||||||||||| || |||||  ||||||||||| ||| | ||| |||||||| ||||||    
T  7910323 tctcatggctagtactcttcaggatacaacagtcacttcttgctaacaccgcatgtgaaatagtaaggtctcgggaact 7910401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 240 - 493
Target Start/End: Complemental strand, 27648594 - 27648335
Alignment:
Q  240 aattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaacttatcggttattgac 339  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||     
T  27648594 aattattataaggtaataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgattattgat 27648495  T
Q  340 tgaggcgtgcacgaagcactgggcttaagagtatt--------ttgcatgaatcacccgatgcgataggtctcatagctaatactctccaggatacaaca 431  Q
    ||||||||| |  | ||| ||| ||||| ||||||        ||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  27648494 tgaggcgtgga--atgcattggacttaaaagtatttcgccaccttggataaattatccgatgcgataggtctcatagctaatactctccaggatacaaca 27648397  T
Q  432 atcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctc 493  Q
     ||||||||  ||| |||||||| ||||||| ||||||||||  ||| ||||||||||||||    
T  27648396 gtcgcttcttgctagcaccgcacatggattaacaaggtctcaaaaaccacttatggatgctc 27648335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 321 - 524
Target Start/End: Original strand, 44686131 - 44686342
Alignment:
Q  321 aaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagctaa 412  Q
    |||||| ||| |||||||||||||| ||||  | ||||||||||||||||||||| ||        || | | | |||||||||||||||||||||||||    
T  44686131 aaacttctcgattattgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggataagttatccgatgcgataggtctcatagctaa 44686230  T
Q  413 tactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctcttgataacttataatttat 512  Q
    ||||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||  |||||||||||||  ||  |||||||||||| |    
T  44686231 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatggatgcttatgggaacttataatttgt 44686330  T
Q  513 tattagtgacta 524  Q
    ||||||||||||    
T  44686331 tattagtgacta 44686342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 238 - 493
Target Start/End: Original strand, 36338824 - 36339086
Alignment:
Q  238 agaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaacttatcggttattg 337  Q
    |||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||  |||||    
T  36338824 agaattattataaggtaatagacagcaagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattg 36338923  T
Q  338 actgaggcgtgcacgaagcactgggcttaagagtattttg-cat---gaa----tcacccgatgcgataggtctcatagctaatactctccaggatacaa 429  Q
    |||||||||||||||||||||| || |||||||||||| | |||   |||    | |||||||||  ||| |||| | |||| |||||||||||||||||    
T  36338924 actgaggcgtgcacgaagcact-ggtttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaa 36339022  T
Q  430 caatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctc 493  Q
    || ||  ||||  ||| ||||||| ||| ||||| |||||||||| ||| |||| || ||||||    
T  36339023 cagtcagttcttgctagcaccgcatgtgaattagtaaggtctcagaaaccacttttgaatgctc 36339086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 225 - 469
Target Start/End: Complemental strand, 353264 - 353012
Alignment:
Q  225 aaaaattagacagagaattattataaggtaataggtaacaagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaac 324  Q
    ||||| |||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  353264 aaaaaatagacatagaattattataaggtaataaacaacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaac 353165  T
Q  325 ttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagctaatact 416  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||| ||        ||  || | |||||||||||||||||| ||||||||||    
T  353164 tcatcgattattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccaccccgaatagattatccgatgcgataggtctcacagctaatact 353065  T
Q  417 ctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggt 469  Q
    ||||||||||||| |||| |||||  |||  | |||||||| |||||||||||    
T  353064 ctccaggatacaataatcacttcttgctagtatcgcacgtgaattagcaaggt 353012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 485
Target Start/End: Complemental strand, 12273740 - 12273581
Alignment:
Q  332 ttattgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagctaatactctccagg 423  Q
    ||||||| |||||||||||  | |||| |||||||||||||||||||        ||| ||||||| |||||||||||||||||| |||||||||  |||    
T  12273740 ttattgattgaggcgtgca--atgcaccgggcttaagagtattttgccatcccggatggatcacccaatgcgataggtctcatagttaatactctttagg 12273643  T
Q  424 atacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttat 485  Q
    ||||||||||| |||||  ||| |||| || ||| ||||||||||||||| |||| ||||||    
T  12273642 atacaacaatcacttcttgctagcaccacatgtgaattagcaaggtctcatgaacaacttat 12273581  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 14802865 - 14802742
Alignment:
Q  389 cgatgcgataggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatgga 488  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| | |||||  ||| ||| ||||||| ||||||||||| |||||||  |||| ||||    
T  14802865 cgatgcgatagatctgatagctaatactctccaggatacaacaaccacttcttgctagcactgcacgtgaattagcaaggtttcaggaaacactt-tgga 14802767  T
Q  489 tgctcttgataacttataatttatt 513  Q
    ||||| ||  |||||||||| ||||    
T  14802766 tgctcatggaaacttataatatatt 14802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 296 - 493
Target Start/End: Complemental strand, 54573047 - 54572855
Alignment:
Q  296 aaatataatagaatagagaacaagtaaacttatcggttattgactgaggcgtgcacgaagcactgggcttaagagtattttgcatgaatcacccgatgcg 395  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||  ||  |    | ||||||     
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcacgaagcactggacttaagagtattt--cacca---tctcgatgca 54572953  T
Q  396 ataggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatggatgctc 493  Q
     ||||||||||||||||||| ||||| ||||||| | || | |||  ||| ||||||||||| |||| ||| |||||||||||||||  |||||||||    
T  54572952 gtaggtctcatagctaataccctccaagatacaaaagtcacatcttgctagcaccgcacgtgaattaacaaagtctcaggaactactcttggatgctc 54572855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 54573544 - 54573488
Alignment:
Q  219 tgtaggaaaaattagacagagaattattataaggta-ataggtaacaagaaatatta 274  Q
    |||||||||| ||||||| ||||||||||||||||| |||  |||||| ||||||||    
T  54573544 tgtaggaaaatttagacatagaattattataaggtacataaataacaaaaaatatta 54573488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 15051602 - 15051497
Alignment:
Q  388 ccgatgcgataggtctcatagctaatact-ctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaactacttatg 486  Q
    |||||||||||| |||||||||||||||| |||||| ||| |||| ||||||||  ||| |||||||||||||||||||||||||||| ||| |||||||    
T  15051602 ccgatgcgatagatctcatagctaatacttctccagaata-aacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcagaaaccacttatg 15051504  T
Q  487 gatgctc 493  Q
    |||||||    
T  15051503 gatgctc 15051497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 478
Target Start/End: Complemental strand, 24542808 - 24542657
Alignment:
Q  335 ttgactgaggcgtgcacgaagcactgggcttaagagtattttgc--------atgaatcacccgatgcgataggtctcatagctaatactctccaggata 426  Q
    ||||||||||||||||  | ||| ||| ||||||||||||||||        ||| |||| |||||||| | | ||||||||||| |||||||||| |||    
T  24542808 ttgactgaggcgtgcaaaatgcattggacttaagagtattttgccattacggatggatcatccgatgcggttgatctcatagctagtactctccagaata 24542709  T
Q  427 caacaatcgcttctaactaacaccgcacgtggattagcaaggtctcaggaac 478  Q
    ||||||||   |||  ||| ||||||||||| ||||||||||||||| ||||    
T  24542708 caacaatcatatcttgctagcaccgcacgtgaattagcaaggtctcatgaac 24542657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 468
Target Start/End: Original strand, 4648282 - 4648351
Alignment:
Q  399 ggtctcatagctaatactctccaggatacaacaatcgcttctaactaacaccgcacgtggattagcaagg 468  Q
    ||||||||||||| |||||| |||||||||||| || |||||  ||||||| |||| || ||||||||||    
T  4648282 ggtctcatagctagtactcttcaggatacaacagtcacttcttgctaacactgcacatgaattagcaagg 4648351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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