View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_39 (Length: 440)
Name: NF15941_high_39
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 26885971 - 26886389
Alignment:
| Q |
18 |
accacatcatgattatgggaataaatataacaaatgtgaacattgaaattggtgatcattgcattactatactctcaggtactaggaatgttcgaatttt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26885971 |
accacatcatgattatgggaataaatataacaaatgtgaacattgaaattggtgatcattgcattactatgctctcaggtactaggaatgttcgaatttt |
26886070 |
T |
|
| Q |
118 |
aaatgtttttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcaccc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26886071 |
aaatgtttttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaataagatcttgatgacatagttgttaaaaattgcaccc |
26886170 |
T |
|
| Q |
218 |
ttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatgga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26886171 |
ttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaagtaaactttggttgcttttaattttatatataaagatattgtgatgga |
26886270 |
T |
|
| Q |
318 |
taatgtgcaatattccattgtcattgattgatcaagattattgtccacattctctgtgcttcaaaaaggcttgtactatttcttggtttgaatattatac |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
26886271 |
taatgtgcaataccccattgtcattgattgatcaagattattgtccacattctctgtgcttcaaaaaggtttgtactatttcttggttcaaatattatac |
26886370 |
T |
|
| Q |
418 |
ttttagattcatctcactc |
436 |
Q |
| |
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||||||||||| ||||||| |
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| T |
26886371 |
ttttagattcaactcactc |
26886389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 78 - 428
Target Start/End: Original strand, 26884323 - 26884674
Alignment:
| Q |
78 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
176 |
Q |
| |
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|||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||| || ||||||||||| |
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| T |
26884323 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatgttttttgtggtttttgtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26884422 |
T |
|
| Q |
177 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
276 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
26884423 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatggaagtctcaattgaagtaaact |
26884522 |
T |
|
| Q |
277 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtcattgattgatcaagattattgtccacattctctgtgc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26884523 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattctctgtgc |
26884622 |
T |
|
| Q |
377 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttagattca |
428 |
Q |
| |
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| |||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
26884623 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttagattca |
26884674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 78 - 428
Target Start/End: Original strand, 26883623 - 26883974
Alignment:
| Q |
78 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
176 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||| || ||||||||||| |
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|
| T |
26883623 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatattttttgtggttttggtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26883722 |
T |
|
| Q |
177 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
276 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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|
| T |
26883723 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatgaaagtctcaattgaagtaaact |
26883822 |
T |
|
| Q |
277 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtcattgattgatcaagattattgtccacattctctgtgc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
26883823 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattccctgtgc |
26883922 |
T |
|
| Q |
377 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttagattca |
428 |
Q |
| |
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| |||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
26883923 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttagattca |
26883974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 34 - 391
Target Start/End: Original strand, 11532343 - 11532697
Alignment:
| Q |
34 |
gggaataaatataacaaatgtgaacattgaaattggtgatcattgcattactatactctcaggtactaggaatgttcgaattttaaatgttttt-gtggt |
132 |
Q |
| |
|
|||||||||||| ||| ||||||||||| || || ||| |||||||| |||| |||||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
11532343 |
gggaataaatatttcaagtgtgaacattggaaccggcgatgattgcattgctatgctctcaggtactaggaatgttcgaatttcagatgttttttgtggt |
11532442 |
T |
|
| Q |
133 |
tttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagta |
232 |
Q |
| |
|
|||||||| ||||| |||||||||||| || | ||||| ||||| ||||| |||||||||| |||||||| ||||| ||| ||| ||| ||||||| |
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| T |
11532443 |
cctggtcatggaattagtgtcggaagtcttggtgggaatgaaggtgaagaagatattgatgacattgttgttaagaattgtacctttaatggcacaagta |
11532542 |
T |
|
| Q |
233 |
ttgatgttagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattc |
332 |
Q |
| |
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| ||||||||||||||| ||||||||||| |||| | |||||||||||| || ||||||| |||| |||||||||||||| ||||||||||| || | |
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| T |
11532543 |
acggtgttagaatcaaatcgtgggagtctcaattgaagaaaactttggttgtttctaattttacatatgaagatattgtgatgaataatgtgcaaaatcc |
11532642 |
T |
|
| Q |
333 |
cattgtcattgattgatcaagattattgtccacattctctgtgcttcaaaaaggcttgt |
391 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||| ||| ||||||||| |||| |
|
|
| T |
11532643 |
cattgtc----attgatcaagattattgttcacatcctccatgcatcaaaaaggtttgt |
11532697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 345
Target Start/End: Original strand, 26301555 - 26301774
Alignment:
| Q |
126 |
ttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggt |
225 |
Q |
| |
|
||||||| |||||||| ||| || |||||||||| || ||||||||| ||| ||||||||| |||||| ||||||| |||||||| ||| |||| |
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|
| T |
26301555 |
ttgtggtcctggtcatggaataaacatcggaagtcttggtaagtatgaagacgaagaagatcttgccgacataattgttaagaattgcacatttaatggt |
26301654 |
T |
|
| Q |
226 |
acaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgc |
325 |
Q |
| |
|
|| |||| || |||||||||||||||| ||||| || |||| |||| ||||||||| |||||| ||||| | |||||||||||||| |||||| |
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|
| T |
26301655 |
acgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgtggttgcttctaatttcatatatgaggatattgtgatggaaaatgtgg |
26301754 |
T |
|
| Q |
326 |
aatattccattgtcattgat |
345 |
Q |
| |
|
| ||| |||||| |||||| |
|
|
| T |
26301755 |
agtatcacattgtaattgat |
26301774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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