View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_4 (Length: 590)
Name: NF15941_high_4
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 169 - 574
Target Start/End: Original strand, 8448727 - 8449136
Alignment:
| Q |
169 |
tgagaggttaataaacaagtaattagagtcaagtattgatgaacttcttatagtatatttgtttgcgagagttcgagtttaatgtcagagtgaaacaatg |
268 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
8448727 |
tgagaggctaataaccaagtaattagagtcaagtattaatgaacttcttatagtataattgtttgtgagagtccgagtttaatgtctgagtgaaacaatg |
8448826 |
T |
|
| Q |
269 |
tctttgtcagactttacttt-----cagttgaactccagattataacaagggaactttttcctaagatctggaggattcattttaaaaagttgtttatac |
363 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
8448827 |
tctttatcatactttactttactttcaattgaactccagattataataagggaactttttcctaagatccggagggttcatttaaaaaagttgtttatac |
8448926 |
T |
|
| Q |
364 |
ttgcttatgaactag--------------aattaaattgacaaattttatatattttatggactgcattttt-attattcacatttataaatgtatgtca |
448 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8448927 |
ttgcttataaactaggtgtggcaaaaaggaactaaattgacaaattttatatattttatggactgtattttttattattcacatttataaatatatgtca |
8449026 |
T |
|
| Q |
449 |
caaaatacattactaacaaaatacattactaacaaggaaaggaattaaacaatatcccggagtataaagagggaaagtcgtcaaaaagtgaatgacatat |
548 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
8449027 |
caa----------------aatacattactaacaaggaaaggaattaaacaatatcctgaagtatacagagggaaagtcgtcaaaaagtgaatgacacat |
8449110 |
T |
|
| Q |
549 |
cgcactgtacggagcgaatatcaagc |
574 |
Q |
| |
|
|||| ||| ||||||||||||||||| |
|
|
| T |
8449111 |
cgcattgtgcggagcgaatatcaagc |
8449136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8448599 - 8448662
Alignment:
| Q |
1 |
atacctcgacttcactatggagagattgagatttcagttcgaaactgatgaacaaaattgaagt |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8448599 |
atacctcgacttcactatggagagattgagattttagttcgaaactgatgaacaaaattgaagt |
8448662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 8236333 - 8236452
Alignment:
| Q |
93 |
acataagaaagatgggtgagattcgttcaatgagatgatgtatttatattactaatgtgacaa-tttatcctcaaaatgagaggttaataaacaagtaat |
191 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| |||||||| | ||| |||| ||| ||||||||| ||| ||||||| |||| ||||||| |
|
|
| T |
8236333 |
acataagaaagatgggtgagattggttccatgagatgatatatttatagtgctagtgtggcaattttatcctc--aataagaggtttataactaagtaat |
8236430 |
T |
|
| Q |
192 |
tagagtcaagtattgatgaact |
213 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
8236431 |
taggctcaagtattaatgaact |
8236452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 8237021 - 8237098
Alignment:
| Q |
394 |
ttttatatattttatggactgcattt-ttattattcacatttataaa-tgtatgtcacaaaatacattactaacaaaa |
469 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
8237021 |
ttttatatattttctggactatatttattattattcacatttataaaatatatgtaacaagatacattactaacaaaa |
8237098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University