View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_42 (Length: 437)
Name: NF15941_high_42
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 7174633 - 7175057
Alignment:
| Q |
1 |
acttcatattttatctaaaacttgcttggtaatttatttattttcttcttgtttatcattaaacatttgtctttgacaacgttaaattcatccaatgggg |
100 |
Q |
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||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
7174633 |
acttcatatttgatctaaaacttgtttggtaatttattt-ttttcttcttgtttatcattaaacatttgtcattgacaacgttaaattcatccaatgtgg |
7174731 |
T |
|
| Q |
101 |
agacaaaacgaacatgtttcacctctctatatcttctttcaaatccacttcttctcgccttctcacactataacatggcgatgacatcctcttctcacca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7174732 |
agataaaacgaacatgtttcacctctctatatcttctttcaaatccacttcttctcgccttctcacactataacatggcgatgacatcctcttctcatca |
7174831 |
T |
|
| Q |
201 |
gggacggatgcaggttaaagcttatgcaggcttgtgcctgcactaagttcataa----nnnnnnnnnnatagtagtaataaataatatatgcgccttctc |
296 |
Q |
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|||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
7174832 |
gggacggatgcaggttaaagtttatgtaagcttgtgcctgcactaaggtcataattttttttttttttatagtagtaataaataatatatgcgccttctc |
7174931 |
T |
|
| Q |
297 |
atactgatattttctttttagaattatttttggtgaacttaatcaaatgttgacatgatactttgagatggaagaacaa-cctctaactcatgtttaaca |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7174932 |
atactgatattttctttttagaattatttttggtgaacttaatcaaatgttgacatgatactttgagatggaagaacaaccctctaactcatgtttaaca |
7175031 |
T |
|
| Q |
396 |
tcaacttgaaaacgtattagattatg |
421 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7175032 |
tcaacttgaaaacgtattagattatg |
7175057 |
T |
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