View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_43 (Length: 434)

Name: NF15941_high_43
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_43
NF15941_high_43
[»] chr8 (3 HSPs)
chr8 (1-418)||(32144683-32145093)
chr8 (341-412)||(6501488-6501559)
chr8 (354-402)||(29096952-29097000)
[»] chr1 (5 HSPs)
chr1 (353-410)||(31667430-31667487)
chr1 (341-402)||(26462650-26462711)
chr1 (383-412)||(50195460-50195489)
chr1 (359-407)||(264615-264663)
chr1 (356-412)||(19637776-19637832)
[»] chr6 (3 HSPs)
chr6 (349-402)||(27661737-27661790)
chr6 (342-407)||(2468472-2468538)
chr6 (349-401)||(29449682-29449734)
[»] chr5 (5 HSPs)
chr5 (347-399)||(29365005-29365057)
chr5 (380-413)||(10948652-10948685)
chr5 (358-411)||(32932228-32932281)
chr5 (355-399)||(30267531-30267575)
chr5 (341-405)||(35972032-35972096)
[»] chr4 (2 HSPs)
chr4 (380-416)||(47665849-47665885)
chr4 (342-407)||(27131672-27131738)
[»] chr3 (2 HSPs)
chr3 (348-407)||(8091412-8091471)
chr3 (348-412)||(1502574-1502638)
[»] scaffold0011 (1 HSPs)
scaffold0011 (356-406)||(240022-240072)
[»] chr2 (2 HSPs)
chr2 (356-405)||(18622423-18622472)
chr2 (340-405)||(39459776-39459841)
[»] chr7 (1 HSPs)
chr7 (359-403)||(43160495-43160539)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 32145093 - 32144683
Alignment:
Q  1 tttggttctgttggttgtggctgttggtgaatctggtagaagattgcacatgagcatttcagaagtttctctgtacttttgaaggtcaaggttctctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145093 tttggttctgttggttgtggctgttggtgaatctggtagaagattgcacatgagcatttcagaagtttctctgtacttttgaaggtcaaggttctctgca 32144994  T
Q  101 tctgggataatatctctagcaccaaagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcatgagaaaatttatcacaataatgaa 200  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32144993 tctgggata---tctctagcaccaaagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcatgagaaaattcatcacaataatgaa 32144897  T
Q  201 tataataaaggtttagttacattttgagtgtgtgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144896 tataataaaggtttagttacattttgagtgtgtgatttttgtctcccagttatgtttagctcaaaactatttcttgaagtttttattctatgaaacagtg 32144797  T
Q  301 acatagaaatagtcattgaacaaacatgccactgactcaaacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtc 400  Q
    ||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144796 acatagaaatagtcattg----aacatgccactgactcaaacacgttggcattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtc 32144701  T
Q  401 ggtgtcggacaccggatg 418  Q
    ||||||||||||||||||    
T  32144700 ggtgtcggacaccggatg 32144683  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 6501488 - 6501559
Alignment:
Q  341 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 412  Q
    ||||||||||| |||||||||||| ||| |||   ||| |||||||||| |||||||||||||||| |||||    
T  6501488 acacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcggtgtcagacac 6501559  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 29096952 - 29097000
Alignment:
Q  354 ggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 402  Q
    ||||||||||||||||||||   || || ||||||||||||||||||||    
T  29096952 ggtaataatttaagaaaataaattaattgaatgtaatcacatgtgtcgg 29097000  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 31667430 - 31667487
Alignment:
Q  353 tggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggac 410  Q
    |||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||    
T  31667430 tggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcggac 31667487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 26462711 - 26462650
Alignment:
Q  341 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 402  Q
    |||||| |||| || |||||||||||||||||   ||| || ||||||||||||||||||||    
T  26462711 acacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtcgg 26462650  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 412
Target Start/End: Complemental strand, 50195489 - 50195460
Alignment:
Q  383 aatgtaatcacatgtgtcggtgtcggacac 412  Q
    ||||||||||||||||||||||||||||||    
T  50195489 aatgtaatcacatgtgtcggtgtcggacac 50195460  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 264615 - 264663
Alignment:
Q  359 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 407  Q
    |||||||||||| ||  ||| |||||||||||||||||||| |||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcg 264663  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 19637776 - 19637832
Alignment:
Q  356 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 412  Q
    |||||||||||||||||   ||  || |||||||||| |||||||||||||||||||    
T  19637776 taataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 27661737 - 27661790
Alignment:
Q  349 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcgg 402  Q
    |||||| || ||||||||||||||| |||| || ||||||||||||||||||||    
T  27661737 acattgatagtaatttaagaaaataatatatttcaatgtaatcacatgtgtcgg 27661790  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 2468538 - 2468472
Alignment:
Q  342 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 407  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  2468538 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 29449682 - 29449734
Alignment:
Q  349 acattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcg 401  Q
    ||||||||| |||||| ||||||||  ||| || |||||||||||||||||||    
T  29449682 acattggtagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 29365005 - 29365057
Alignment:
Q  347 tgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 399  Q
    ||||| ||| |||||||||||||||| ||||| ||||||||||||||| ||||    
T  29365005 tgacaatggcaataatttaagaaaatggtataattaaatgtaatcacaggtgt 29365057  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 413
Target Start/End: Complemental strand, 10948685 - 10948652
Alignment:
Q  380 ttaaatgtaatcacatgtgtcggtgtcggacacc 413  Q
    |||||||||||||||||||||||||| |||||||    
T  10948685 ttaaatgtaatcacatgtgtcggtgttggacacc 10948652  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 32932281 - 32932228
Alignment:
Q  358 ataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggaca 411  Q
    ||||||| |||||||| |||| |  ||||||||||||||||||||||| |||||    
T  32932281 ataattttagaaaataatataatccaatgtaatcacatgtgtcggtgttggaca 32932228  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 30267575 - 30267531
Alignment:
Q  355 gtaataatttaagaaaatagtatagttaaatgtaatcacatgtgt 399  Q
    |||||||||| |||||||| |||| ||||||||||||||| ||||    
T  30267575 gtaataatttgagaaaataatataattaaatgtaatcacaagtgt 30267531  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 35972096 - 35972032
Alignment:
Q  341 acacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 405  Q
    |||||||||  || |||||||||||| ||||||| ||| || |||||||||||||| ||| ||||    
T  35972096 acacgttgattttagtaataatttaataaaatagaataattgaatgtaatcacatgagtcagtgt 35972032  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 47665885 - 47665849
Alignment:
Q  380 ttaaatgtaatcacatgtgtcggtgtcggacaccgga 416  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47665885 ttaaatgtaatcacatgtgtcggtgttggacaccgga 47665849  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 27131738 - 27131672
Alignment:
Q  342 cacgttgacattggtaataatttaagaaaatagta-tagttaaatgtaatcacatgtgtcggtgtcg 407  Q
    ||||| ||||||||||||||||||||||||| | | || || ||||||| ||||||||| |||||||    
T  27131738 cacgtagacattggtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 8091471 - 8091412
Alignment:
Q  348 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcg 407  Q
    |||| |||||||||||||||||||||| ||  || |||||||| |||||||||| |||||    
T  8091471 gacactggtaataatttaagaaaataggattattgaatgtaattacatgtgtcgatgtcg 8091412  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 1502574 - 1502638
Alignment:
Q  348 gacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtcggacac 412  Q
    |||| |||||||||| |||||||||   ||| || |||||||||||||||||| |||| ||||||    
T  1502574 gacactggtaataatctaagaaaatgacataattgaatgtaatcacatgtgtctgtgttggacac 1502638  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 240072 - 240022
Alignment:
Q  356 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgtc 406  Q
    ||||||||| |||||||| |||| || |||||||||| |||||||||||||    
T  240072 taataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 18622423 - 18622472
Alignment:
Q  356 taataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 405  Q
    |||||||||||||||||   ||| ||||||| ||||||||||||||||||    
T  18622423 taataatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 39459776 - 39459841
Alignment:
Q  340 aacacgttgacattggtaataatttaagaaaatagtatagttaaatgtaatcacatgtgtcggtgt 405  Q
    ||||||| |||||||||||||||||||| ||||    || || |||||||||||| ||||||||||    
T  39459776 aacacgtcgacattggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgtcggtgt 39459841  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 43160495 - 43160539
Alignment:
Q  359 taatttaagaaaatagtatagttaaatgtaatcacatgtgtcggt 403  Q
    |||||||||||||||  ||| || |||||||||||||||||||||    
T  43160495 taatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

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