View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_47 (Length: 428)
Name: NF15941_high_47
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 38422024 - 38422425
Alignment:
| Q |
13 |
aagaaaatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaat |
112 |
Q |
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| T |
38422024 |
aagaatatgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaat |
38422123 |
T |
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| Q |
113 |
aattgggcggcttcaactatgacttaatctataagaaagggagaaacaagacagtacttcaagcatgatctagaggagaagatcattgctacttattagt |
212 |
Q |
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| T |
38422124 |
aattgggcggcttcaactatgacttaatctataagaaagggagaaacaagacagtacttcaagcatgatctagaggagaagatcattgctactttttagt |
38422223 |
T |
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| Q |
213 |
ggttatttataccatcttcattgatttaatacaacatgtcaatgcatcatatgtcatccactagtaagattataatatatttaaatgatgagatctgatc |
312 |
Q |
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| T |
38422224 |
ggttatttataccatcttcattgatttaatacaacatgtcaatgcatcatatgtcatccactagtaagattataatatatttaaatgataagatctgatc |
38422323 |
T |
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| Q |
313 |
ggacatctgtgcaaagtcatcgtagattgtcaatgaatcgaaagtaaactcatggtatatttcaaaattcaattattaatttgtttatcgataattgata |
412 |
Q |
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| T |
38422324 |
ggacatctgtgcaaagtcatcgtagattgtcaatgtatcgaaagtaaactcatggtatatttcaaaatttaattattaatttttttatcgataattgata |
38422423 |
T |
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| Q |
413 |
tt |
414 |
Q |
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| T |
38422424 |
tt |
38422425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 38414901 - 38415147
Alignment:
| Q |
19 |
atgagaggaaaatgtaataagatgtcaccattatatctgttgcatcaatataggttattccagtttttcaacagaagtgcttacatgtattaataatt-- |
116 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38414901 |
atgagaggaaaatgtaataagttgtcaccattatatctgttgcatcaatattggttattccagttcctcaacagaagtgcttacatgtattaataattca |
38415000 |
T |
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| Q |
117 |
-gggcggcttcaactatgacttaatctataagaaagggagaa-acaagacagtacttcaagcatgatctagaggagaagatcattgctacttattagtgg |
214 |
Q |
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| T |
38415001 |
gggtcagcttcaaccatgacttaatctgtaagaaaggcacaagacaagacagtacttcaagcatgatctataagagaagatcactgctacatttttgtga |
38415100 |
T |
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| Q |
215 |
ttatttataccatcttcattgatttaatacaacatgtcaatgcatca |
261 |
Q |
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| T |
38415101 |
ttatttccactatcttcattgatttaatagaacatgtcaatgcatca |
38415147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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