View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_57 (Length: 395)
Name: NF15941_high_57
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 4 - 382
Target Start/End: Complemental strand, 4491895 - 4491517
Alignment:
| Q |
4 |
tcagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattacagaagt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4491895 |
tcagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttattactagctttattacagaagt |
4491796 |
T |
|
| Q |
104 |
acttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaacttactca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4491795 |
acttctataaccataacaactgcgaagagcaagctcatcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaacttactca |
4491696 |
T |
|
| Q |
204 |
aggaaatgtaatcgccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgaca |
303 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4491695 |
aggaaatgtaatcaccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgaca |
4491596 |
T |
|
| Q |
304 |
ggagcatttagaaatggtacagtcctatacattggaaatctcatgcctttaaataatgctgcaacttatggtggaagtg |
382 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4491595 |
ggagcatttagaaatggtacaggcctatacattggaaatctcatgcctttaaataatgcagcaacttatggtggaagtg |
4491517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 4497573 - 4497199
Alignment:
| Q |
5 |
cagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattacagaagta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4497573 |
cagaaactgagagccttacccttgacaaattttgggtactctatttcatatgtgctaccacttccacaatctgcttattactagctttattacagaagta |
4497474 |
T |
|
| Q |
105 |
cttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaatcacagaacctaatgttgataataatcaccaacttactcaa |
204 |
Q |
| |
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|||| ||||||||||||| || |||||| |||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4497473 |
cttccataaccataacaattgtgaagaggaagctcaccaactttctcaaggaaatgtaatctctgaacctaatgttgataataatcaccaacttactcaa |
4497374 |
T |
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| Q |
205 |
ggaaatgtaatcgccgaatctaatgttgataacaatcatcagcttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgacag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4497373 |
ggaaatgtaatcgccgaatctaatgttgataacaatcatcaacttcctcaaggaaacgtaatctccgaatctgatgatgataataacaaagatttgacag |
4497274 |
T |
|
| Q |
305 |
gagcatttagaaatggtacagtcctatacattggaaatctcatgcctttaaataatgctgcaacttatggtggaa |
379 |
Q |
| |
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|||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4497273 |
gagcatctagaaatggtacaggcttatacattggaaatctcatgcctttaaataacgctgcaacttatggtggaa |
4497199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 4504150 - 4503994
Alignment:
| Q |
5 |
cagaaactgagagccttacccttgacaaattttggggactctatttcatatgtgctaccacttccacaatctgcttagtactagctttattacagaagta |
104 |
Q |
| |
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||||||| ||||| || ||||||| |||||| | |||||| ||| ||||||||||| |||||||||| |||||| || ||||||||||||| ||| || |
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| T |
4504150 |
cagaaacggagagtctgacccttgccaaattcttgggactatatatcatatgtgctgccacttccaccatctgcatattactagctttattgaggaaata |
4504051 |
T |
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| Q |
105 |
cttctataaccataacaactgcgaagagcaagctcctcaactttctcagggaaatgtaat |
164 |
Q |
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||| |||||||||| ||| || ||||||| |||||||| |||| ||||||||||| |
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| T |
4504050 |
tttccataaccataatcactatgatgagcaag---ctcaacttcctcaaggaaatgtaat |
4503994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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