View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_58 (Length: 393)
Name: NF15941_high_58
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 121 - 378
Target Start/End: Complemental strand, 51858815 - 51858558
Alignment:
| Q |
121 |
gaacatcacccaagtatgttacacgaagccatccacttgattcttcatcaatcttcaaaacacttatatccatgactaatttgcatgtattcatagcagt |
220 |
Q |
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| T |
51858815 |
gaacatcacccaagtatgttacacgaagccatctacttgattcttcatcaatcttcaaaacactgatatccatgactaatttgcatgtattcatagcagt |
51858716 |
T |
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| Q |
221 |
tcttctaaaatacatttcaaccacaaaaagacttccacgcgcctccaccaaacgcttcttgctaccatcattatttaaggagggtgaagactgaaccaac |
320 |
Q |
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| T |
51858715 |
tcttctgaaatacatttcaaccacaaaaagacttccacgcgcctccaccaaacgcttcttgctaccatcattatttaaggagggtgaagaccgaaccaac |
51858616 |
T |
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| Q |
321 |
ttaaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatct |
378 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858615 |
ttaatggatgaacaattgatccagaaaataattccactcttatcgataacataaatct |
51858558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 51859461 - 51859403
Alignment:
| Q |
51 |
aaacacatcattaagcctaatcattaactgacaatgaaaagttcaagtctttacccaaa |
109 |
Q |
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| T |
51859461 |
aaacacatcattaagcctaatcattaacagacaatgaaaagttcaagtctttacccaaa |
51859403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 68 - 375
Target Start/End: Original strand, 34864625 - 34864928
Alignment:
| Q |
68 |
taatcattaactgacaatgaaaagttcaagtctttacccaaaccaagacaaacgaacatcacccaagtatgttacacgaagccatccacttgattcttca |
167 |
Q |
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| T |
34864625 |
taatcattagcagacaatgaaaagtttaagtctttacccaaaacaa-aca---gattatcacccaagtctgttacacgaagccatctacttgattctcca |
34864720 |
T |
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| Q |
168 |
tcaatcttcaaaacacttatatccatgactaatttgcatgtattcatagcagttcttctaaaatacatttcaaccacaaaaagacttccacgcgcctcca |
267 |
Q |
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|||| || |||||||| |||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| | | |||| |
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| T |
34864721 |
tcaacgtttaaaacactgatatccatgagtaatttgcaggtattcacgccagttcttctagaatacatttcaaccacaaaaagacttccatgtgagtcca |
34864820 |
T |
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| Q |
268 |
ccaaacgcttcttgctaccatcattatttaaggagggtgaagactgaaccaacttaaaggatgaacaattgatccagaaaataattccactcttatcgat |
367 |
Q |
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| T |
34864821 |
ccaaacacttcttgctacgatcattacttaaggagggtgaacattgaaccaacttaaaggatgaacaattgatccagaaaataattccacttttatccac |
34864920 |
T |
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| Q |
368 |
aacataaa |
375 |
Q |
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| T |
34864921 |
aacataaa |
34864928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 34145795 - 34145703
Alignment:
| Q |
264 |
tccaccaaacgcttcttgctaccatcattatttaaggagggtgaagactgaaccaacttaaaggatgaacaattgatccagaaaataattcca |
356 |
Q |
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||||||||| |||||| ||||| || ||||||| | ||||| |||||||||||| |||||||||||||||| |||| |||||||||||| |
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| T |
34145795 |
tccaccaaatacttctttttaccaccactatttaatggtggtgacgactgaaccaacgtaaaggatgaacaattaatccgaaaaataattcca |
34145703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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