View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_59 (Length: 391)
Name: NF15941_high_59
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 4499032 - 4498669
Alignment:
| Q |
9 |
gaaatgaagtccgcacaaaacttgttactatacacaatccaataaactgccacctcagccacaaaatataattttcaaatcacgtgccacaaatcagcca |
108 |
Q |
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| T |
4499032 |
gaaaagaagtccgcacaaaacttgttactatacacaatccaataaactgccacctcagccacaaaatataattttcaaatcacgtgccacgaatcagcca |
4498933 |
T |
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| Q |
109 |
aatctttagggagtgggccccagttttgccacatgtggcttatcaaaaataaaaagccaaaagcgtcttcgcagaccacacatcagcaacacaaggatat |
208 |
Q |
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| T |
4498932 |
aatctttagggagtgggccccagttgtgccacatgtggctt-tcaaaaataaaaagccaaaagcgtctttgcagaccacacatcagcaacacaaggatat |
4498834 |
T |
|
| Q |
209 |
aaatggataatttgtatgtgagcgttcgaagttgccacttggtgcttttctggtacagcaagcaaacaacatatatcacataacgaatcagtgaaatcag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4498833 |
aaatggataatttgtatgtgagcgttcgaagttgccacttggtgcttttctggaacagcaagcaaacaacatatatcacataacgaatcagtg-aatcag |
4498735 |
T |
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| Q |
309 |
atagaatatacgtacactgcattatacccattcatgtcgatgtggcatactgtaaagaagtaataa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498734 |
atagaatatacgtacactgcattatacccattcatgtcgatgtggcatactgtaaagaagtaataa |
4498669 |
T |
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