View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_61 (Length: 390)
Name: NF15941_high_61
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_61 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 82 - 288
Target Start/End: Original strand, 9535879 - 9536086
Alignment:
| Q |
82 |
atgtatttatattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta |
181 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535879 |
atgtatttgtattgattgttgatttgttctaaaagattaaatatttaaattctcaattcacctttgaatcatatttgatattcattgtcttagtttttta |
9535978 |
T |
|
| Q |
182 |
tcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattcatcccatcctctagcg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
9535979 |
tcatcatcaaacacagattcaatagtcatactctttttaatccatgtattcctaaaaaaaattgaaaaacgaaaaacgctattcatcccatcctctagcg |
9536078 |
T |
|
| Q |
281 |
aacttcct |
288 |
Q |
| |
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|||||||| |
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| T |
9536079 |
aacttcct |
9536086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9535741 - 9535820
Alignment:
| Q |
1 |
tattgtctcttatggtgacgttaatcaatgtaaaattctgagtagaggtgttgttggaaatccttccacatctaacagaa |
80 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9535741 |
tattgtctcttgtggtgatattaatcaatgtaaaattctgagtagaggtgttgttggaaatccttccacatctagcagaa |
9535820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 9536084 - 9536141
Alignment:
| Q |
319 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaacgccccagctg |
376 |
Q |
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| T |
9536084 |
cctcagtcccacttttgcctttcctatttggacactcggttataaaatgccccagctg |
9536141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 27272207 - 27272356
Alignment:
| Q |
91 |
tattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat |
188 |
Q |
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|||||||| |||||||||| | |||||| | ||||| || |||||||||| |||||||| |||||||| |||||||| ||| |||| ||||||| | |
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| T |
27272207 |
tattgattattgatttgtttcataagattcattatttgaacctctcaattcagctttgaatattatttgattttcattgttttaattttgttatcattgt |
27272306 |
T |
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| Q |
189 |
caaacacagattcaatagtcatactctttttaatccatgttttcgcaaaa |
238 |
Q |
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| T |
27272307 |
cgcacacaaattcaatagtcatactcttgttaatccacgcttttgcaaaa |
27272356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 135 - 311
Target Start/End: Original strand, 16192154 - 16192330
Alignment:
| Q |
135 |
caattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcg |
233 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| || |||| |||||||||| | |||| |||| |||||||||||||| |||||||| ||||| | |
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| T |
16192154 |
caattcacatttgaatcttatttgatattcattgtcctaattttgttatcatcattacgcacaaattcgatagtcatactcttgttaatccacgtttttg |
16192253 |
T |
|
| Q |
234 |
caaaaaattttgaa-aacgaaaaacgctattcatcccatcctctagcgaacttcctatagtttgtcatatagactaaca |
311 |
Q |
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| T |
16192254 |
caaaaccttttgaagaacgaaaaatgctattgacacccccctctagcgcacttc--ttagtttgtcatatagactaaca |
16192330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 17349939 - 17350117
Alignment:
| Q |
91 |
tattgattgttgatttgttctaaaagattaaatatttaaa-ttctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcat |
188 |
Q |
| |
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|||||||||||||||| | || |||| | | ||||| || ||||||||||||||||||||| || || || |||||||||||| |||| ||||||||| |
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| T |
17349939 |
tattgattgttgattttctttataagagtcattatttgaacttctcaattcacctttgaatcttagtttattttcattgtcttaattttgttatcatcac |
17350038 |
T |
|
| Q |
189 |
caaacacagattcaatagtcatactcttt-ttaatccatgttttcgcaaaaaattttg-aaaacgaaaaacgctattca |
265 |
Q |
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|| |||| |||||||||||||||||||| |||||||| | ||| |||||| ||||| ||||||||||||| |||||| |
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| T |
17350039 |
taagcacaaattcaatagtcatactctttgttaatccacgcttttgcaaaatcttttgaaaaacgaaaaacgttattca |
17350117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 6241 - 6104
Alignment:
| Q |
114 |
aagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcata |
211 |
Q |
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|||||| | ||||||||| |||||||| | ||||||||| |||||| |||||||||||||| |||| |||||||||||| |||| |||||||||||||| |
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| T |
6241 |
aagattcattatttaaatctctcaatttagctttgaatcttatttgttattcattgtcttaattttgttatcatcatcatgcacaaattcaatagtcata |
6142 |
T |
|
| Q |
212 |
ctctttttaatccatgttttcgcaaaaaattttgaaaa |
249 |
Q |
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| || | |||||| |||||||||||| ||||||||| |
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| T |
6141 |
gttttgtgaatccacgttttcgcaaaaccttttgaaaa |
6104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 23142442 - 23142308
Alignment:
| Q |
134 |
tcaattcacctttgaatcatatttgatattcattgtcttagtttt-ttatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttc |
232 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||| |||| |||||||| || |||| | |||||||| | |||| |
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| T |
23142442 |
tcaattcaactttgaatcttatttgatattcattgtcttaattttgttatcatcatcacgcacaaattcaataatcgtactttagttaatccacgctttc |
23142343 |
T |
|
| Q |
233 |
gcaaaaaattttgaaaa--cgaaaaacgctattca |
265 |
Q |
| |
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||||||| ||| |||| |||||||||||||||| |
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| T |
23142342 |
gcaaaaaccttttaaaaaccgaaaaacgctattca |
23142308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 3462372 - 3462253
Alignment:
| Q |
132 |
tctcaattcacctttgaatcatatttgatattcattgtctt-agttttttatcatcatcaaacacagattcaa-tagtcatactctttttaatccatgtt |
229 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||| | ||| |||||||||||| |||| || ||| ||||||||||||| |||||| | | | |
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| T |
3462372 |
tctcaattcacctttaaatcttatttgatattcattgtcttgattttgttatcatcatcacgcacaaatgcaattagtcatactcttgttaatctacgct |
3462273 |
T |
|
| Q |
230 |
ttcgcaaaaaattttgaaaa |
249 |
Q |
| |
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||||||||| ||||||||| |
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| T |
3462272 |
ttcgcaaaaccttttgaaaa |
3462253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 17279071 - 17279294
Alignment:
| Q |
82 |
atgtatttatattgattgttgatttgttctaaaagattaaatatttaaat-tctcaattcacctttgaatcatatttgatattcattgtcttagtttt-t |
179 |
Q |
| |
|
|||||||| |||||||||||||| || || | |||||| | ||||| || |||||||||| |||||||||||||| |||||||||| |||| | |
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| T |
17279071 |
atgtatttgtattgattgttgatatgctccataagattcattatttgaacctctcaattcagctttgaatcatattaa-----cattgtcttaattttgt |
17279165 |
T |
|
| Q |
180 |
tatcatcatcaaacacagattcaatagtcatactctttttaatccatgttttcgcaaaaaattttgaaaacg-aaaaacgctattcatcccatcctctag |
278 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || | ||||| | ||||| |||| |||| |||| | ||||||| |||||| ||| | ||||| |
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|
| T |
17279166 |
tatcatcaacacacacaaattcaatagtcatacttttggttatccaagctttcgtaaaaccttttaaaaatgaaaaaacgttattcacccc--catctag |
17279263 |
T |
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| Q |
279 |
cgaacttcctatagtttgtcatatagactaaca |
311 |
Q |
| |
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|| |||||| |||||||||||||| ||||||| |
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|
| T |
17279264 |
cgcacttcc--tagtttgtcatatacactaaca |
17279294 |
T |
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