View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_62 (Length: 388)

Name: NF15941_high_62
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_62
NF15941_high_62
[»] chr5 (2 HSPs)
chr5 (1-374)||(11875007-11875379)
chr5 (146-252)||(30788255-30788362)
[»] chr8 (7 HSPs)
chr8 (144-274)||(43950312-43950439)
chr8 (305-347)||(28239690-28239732)
chr8 (144-245)||(16345235-16345336)
chr8 (277-342)||(18733850-18733915)
chr8 (282-342)||(9619548-9619607)
chr8 (282-342)||(11725517-11725576)
chr8 (228-272)||(12893715-12893759)
[»] chr7 (5 HSPs)
chr7 (144-272)||(33010227-33010356)
chr7 (196-275)||(42669391-42669471)
chr7 (144-209)||(27045510-27045575)
chr7 (290-347)||(31235977-31236034)
chr7 (282-342)||(12539145-12539204)
[»] chr2 (7 HSPs)
chr2 (188-272)||(15300315-15300400)
chr2 (144-262)||(22839029-22839148)
chr2 (144-215)||(25766532-25766603)
chr2 (226-275)||(33216271-33216320)
chr2 (144-244)||(37596291-37596392)
chr2 (281-345)||(19193424-19193488)
chr2 (282-342)||(36233837-36233896)
[»] chr3 (5 HSPs)
chr3 (282-342)||(32607293-32607353)
chr3 (282-347)||(53327824-53327889)
chr3 (168-273)||(42247141-42247247)
chr3 (179-223)||(12228007-12228051)
chr3 (228-260)||(30057342-30057374)
[»] chr4 (6 HSPs)
chr4 (144-265)||(19533925-19534047)
chr4 (282-342)||(21089992-21090052)
chr4 (285-347)||(10359731-10359793)
chr4 (228-265)||(13435064-13435101)
chr4 (228-277)||(20814446-20814495)
chr4 (305-337)||(21555006-21555038)
[»] chr1 (2 HSPs)
chr1 (168-231)||(1191202-1191265)
chr1 (147-223)||(38644189-38644262)
[»] chr6 (3 HSPs)
chr6 (228-265)||(15337526-15337563)
chr6 (228-264)||(1054524-1054560)
chr6 (145-197)||(23636042-23636094)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 11875007 - 11875379
Alignment:
Q  1 gcctagatataaagaggatgtattgaacaattggaagtagaaaatctatatccataattatattaatcatctctttacttttgtacacatgtaattgcac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11875007 gcctagatataaagaggatgtattgaacaattggaaggagaaaatctatatccataattatattaatcatctcttta-ttttgtacacatgtaattgcac 11875105  T
Q  101 atcttttacctttaatatctttaatatgtattgccaaatttattaaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctg 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  11875106 atcttttacctttaatatttttaatatgtattgccaaatttattaaaaatttgatattttgataaaattcatcgagacaaatccaataacatcttatctg 11875205  T
Q  201 ctatcatttatctttacataatagcagaaaatatggtaaaagtatgttatgtgaataatgcatatagtcaaactatgactttagttttctctctctagat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11875206 ctatcatttatctttacataatagcagaaaatatggtaaaagtatgttatgtgaataatacatatagtcaaactacgactttagttttctctctctagat 11875305  T
Q  301 tccatcttccattttcttcatttagggggtggttttgggtcatttttaacgcgaaatcactcacttatattctt 374  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11875306 tccctctttcattttcttcatttagggggtggttttgggtcatttttaacgcgaaatcactcacttatattctt 11875379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 30788362 - 30788255
Alignment:
Q  146 aaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcag-aaaatatggtaaaagta 244  Q
    ||||||||||||||||| ||  |||||| ||||||||| ||  |||||||||  | ||| ||||||||||  ||| ||| || |||||||||| ||||||    
T  30788362 aaaatttgatattttgaaaatattcatcgagacaaatttaacgacatcttatacgatattatttatctttgtatattagtagaaaaatatggtcaaagta 30788263  T
Q  245 tgttatgt 252  Q
     |||||||    
T  30788262 agttatgt 30788255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 43950312 - 43950439
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcagaaaa-tatggtaaaag 242  Q
    |||||| |||||||||||| ||  |||||||||||||||  |    |||||||| ||||| ||||| ||| || ||| ||| |||||| | |||| ||||    
T  43950312 taaaaagttgatattttgaaaatattcatcaagacaaatcga----catcttatatgctaccatttgtctatatatattagtagaaaaatttggtcaaag 43950407  T
Q  243 tatgttatgtgaataatgcatatagtcaaact 274  Q
    ||||||||||||||| |||| |||||||||||    
T  43950408 tatgttatgtgaatagtgcacatagtcaaact 43950439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 28239690 - 28239732
Alignment:
Q  305 tcttccattttcttcatttagggggtggttttgggtcattttt 347  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  28239690 tcttccattttcttcattgagggggtgattttgggtcaatttt 28239732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 16345336 - 16345235
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcagaaaatatggtaaaagt 243  Q
    ||||||||||||||||||| ||  || ||| |||| |||||||  ||||||||| || ||| ||||||||||| ||| ||| |||  ||| ||| |||||    
T  16345336 taaaaatttgatattttgaaaatatttatcgagacgaattcaacgacatcttatatgatattatttatctttatatattagtagatcatacggttaaagt 16345237  T
Q  244 at 245  Q
    ||    
T  16345236 at 16345235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 18733850 - 18733915
Alignment:
Q  277 gactttagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    |||| ||||||||||||||||| | |  |||||||||||||| ||| ||| ||||||| |||||||    
T  18733850 gactctagttttctctctctaggtcctctcttccattttctttattgaggaggtggttgtgggtca 18733915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 9619607 - 9619548
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||||||   |||| || |||||||||| | |||||||||||||||||    
T  9619607 tagttttctctctctagattttctcttacaatttcttcattga-ggggtggttttgggtca 9619548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 11725517 - 11725576
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||||||   |||| || |||||||||| | |||||||||||||||||    
T  11725517 tagttttctctctctagattttctctttcagtttcttcattga-ggggtggttttgggtca 11725576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 12893715 - 12893759
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatgcatatagtcaaa 272  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||    
T  12893715 aaaatatggtcaaagtatgttaagtcaataatgcatattgtcaaa 12893759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 33010356 - 33010227
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcagaaa-atatggtaaaag 242  Q
    |||||| |||||||||||| ||  ||||||||||||||| | | || || |||| || || ||||| |||||| ||| ||| ||||| |||||||  |||    
T  33010356 taaaaagttgatattttgaaaatattcatcaagacaaatccgacaatattttatatgataacatttgtctttatatattagtagaaatatatggttgaag 33010257  T
Q  243 tatgttatgtgaataatgcatatagtcaaa 272  Q
    ||||||||||||| | |||| |||||||||    
T  33010256 tatgttatgtgaacagtgcacatagtcaaa 33010227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 42669391 - 42669471
Alignment:
Q  196 atctgctatcatttatctttacataatagcagaaaa-tatggtaaaagtatgttatgtgaataatgcatatagtcaaacta 275  Q
    |||||||| |||||||||||| ||| | | |||||| |||||| ||||| ||||||||||||| |||| ||||||||||||    
T  42669391 atctgctaccatttatctttatatattggtagaaaaatatggttaaagtgtgttatgtgaatagtgcacatagtcaaacta 42669471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 27045510 - 27045575
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcattt 209  Q
    ||||||||||||||||||| ||  |||||| || |||||| || |||||||||| ||||| |||||    
T  27045510 taaaaatttgatattttgaaaatattcatcgaggcaaattaaacaacatcttatatgctaacattt 27045575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 31236034 - 31235977
Alignment:
Q  290 tctctctagattccatcttccattttcttcatttagggggtggttttgggtcattttt 347  Q
    ||||||||||||   |||||||||||||||||| |||| ||| |||||||||| ||||    
T  31236034 tctctctagattttctcttccattttcttcattgagggagtgattttgggtcaatttt 31235977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 12539204 - 12539145
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||||||   ||||||| |||||||||| | ||||||||||| |||||    
T  12539204 tagttttctctctctagattttctcttccagtttcttcattga-ggggtggtttttggtca 12539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 15300315 - 15300400
Alignment:
Q  188 aacatcttatctgctatcatttatctttacataatagcagaaaat-atggtaaaagtatgttatgtgaataatgcatatagtcaaa 272  Q
    |||||||||| ||| ||||||| |||||| ||| ||| ||||||| ||||| ||||||||||||||| |||||||| || ||||||    
T  15300315 aacatcttatatgccatcatttgtctttatatattagtagaaaattatggttaaagtatgttatgtggataatgcacatggtcaaa 15300400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 22839029 - 22839148
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatag-cagaaaatatggtaaaag 242  Q
    ||||||||||||||||||| ||  |||||| ||||||||  || |||||||||| ||||| |||||   |||| ||| |||  | |||||||||| ||||    
T  22839029 taaaaatttgatattttgaaaatattcatcgagacaaatcaaacaacatcttatatgctaacattttaatttatatactagttaaaaaatatggtcaaag 22839128  T
Q  243 tatgttatgtgaataatgca 262  Q
    || |||||||||||| ||||    
T  22839129 taagttatgtgaatagtgca 22839148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 25766603 - 25766532
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatcttt 215  Q
    ||||||||||||||||||| ||  |||||| |||| ||| |||| ||||||||| || ||| ||||||||||    
T  25766603 taaaaatttgatattttgaaaatattcatcgagacgaatccaatgacatcttatatgatattatttatcttt 25766532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 33216271 - 33216320
Alignment:
Q  226 agaaaatatggtaaaagtatgttatgtgaataatgcatatagtcaaacta 275  Q
    |||||||||||| ||| |||||||| |||||| || ||||||||||||||    
T  33216271 agaaaatatggtcaaaatatgttatatgaatattgtatatagtcaaacta 33216320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 37596291 - 37596392
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagca-gaaaatatggtaaaag 242  Q
    ||||||||||||||| | | ||  |||||||| |||||| ||||| |||||||| || ||  ||||||||||| ||||||| | ||||||||| | ||||    
T  37596291 taaaaatttgatattataaaaatattcatcaatacaaatacaatatcatcttatatgttacaatttatctttatataatagtatgaaaatatgatcaaag 37596390  T
Q  243 ta 244  Q
    ||    
T  37596391 ta 37596392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 19193424 - 19193488
Alignment:
Q  281 ttagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtcattt 345  Q
    |||||||||||| ||||| |||  ||||||||||||||| || |||||||| |  ||||||||||    
T  19193424 ttagttttctctttctaggttctctcttccattttcttccttaagggggtgatcatgggtcattt 19193488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 36233837 - 36233896
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||||||   |||| || |||||||||| | |||||||||||||||||    
T  36233837 tagttttctctctctagattttctcttgcaatttcttcattga-ggggtggttttgggtca 36233896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 32607293 - 32607353
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||||||   |||| || |||||||||| |||||||||||||||||||    
T  32607293 tagttttctctctctagattttctcttacaatttcttcattgagggggtggttttgggtca 32607353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 53327889 - 53327824
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtcattttt 347  Q
    ||||||||||| |||||||||  |||| ||||||||||||| |||||||  |||||||| ||||||    
T  53327889 tagttttctctttctagattctctctttcattttcttcattgagggggttattttgggtaattttt 53327824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 42247247 - 42247141
Alignment:
Q  168 ttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcag-aaaatatggtaaaagtatgttatgtgaataatgcatata 266  Q
    |||||| |||||||||||| ||||||||||  | ||| ||||||||||| ||  ||| || |||||||||| ||| ||| ||| || ||||||||| ||     
T  42247247 ttcatcgagacaaattcaagaacatcttataagatattatttatctttatattttagtagaaaaatatggtcaaaatatattacgtcaataatgcacatt 42247148  T
Q  267 gtcaaac 273  Q
    |||||||    
T  42247147 gtcaaac 42247141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 12228051 - 12228007
Alignment:
Q  179 aaattcaataacatcttatctgctatcatttatctttacataata 223  Q
    |||||||| |||||||||| || ||||||||||||||| ||||||    
T  12228051 aaattcaaaaacatcttatatgttatcatttatctttatataata 12228007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 30057374 - 30057342
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatg 260  Q
    |||||||||| ||||||||||||||||||||||    
T  30057374 aaaatatggttaaagtatgttatgtgaataatg 30057342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 19533925 - 19534047
Alignment:
Q  144 taaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcagaaaa-tatggtaaaag 242  Q
    ||||||||||||||||| | ||  |||||| |||||||| ||| || ||||||| ||| |  |||| |||||  ||| ||| |||||| ||| || ||||    
T  19533925 taaaaatttgatattttaaaaatattcatcgagacaaatccaacaatatcttatatgccacaatttgtctttgtatattagtagaaaaatattgtcaaag 19534024  T
Q  243 tatgttatgtgaataatgcatat 265  Q
    |||||||| ||||||||||||||    
T  19534025 tatgttatatgaataatgcatat 19534047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 21089992 - 21090052
Alignment:
Q  282 tagttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtca 342  Q
    ||||||||||||||||| ||   ||||| | |||||||||| |||||||||||||||||||    
T  21089992 tagttttctctctctaggttttctcttctagtttcttcattgagggggtggttttgggtca 21090052  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 10359793 - 10359731
Alignment:
Q  285 ttttctctctctagattccatcttccattttcttcatttagggggtggttttgggtcattttt 347  Q
    |||| ||||||||||||   |||| || |||||||||| ||||||||||||||||||| ||||    
T  10359793 ttttttctctctagattttctctttcagtttcttcattgagggggtggttttgggtcaatttt 10359731  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 13435064 - 13435101
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatgcatat 265  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  13435064 aaaatatggttaaagtgtgttatgtgaataatgcatat 13435101  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 20814495 - 20814446
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatgcatatagtcaaactatg 277  Q
    |||||||||| | ||||| ||||||||||| |||| ||||||||||||||    
T  20814495 aaaatatggtcatagtatattatgtgaatagtgcacatagtcaaactatg 20814446  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 21555038 - 21555006
Alignment:
Q  305 tcttccattttcttcatttagggggtggttttg 337  Q
    |||||||||||||||||| ||||||||||||||    
T  21555038 tcttccattttcttcattgagggggtggttttg 21555006  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 1191265 - 1191202
Alignment:
Q  168 ttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataatagcagaaaa 231  Q
    |||||| |||||||||||| ||||| |||| |||||  ||||||||||| ||||||| ||||||    
T  1191265 ttcatcgagacaaattcaacaacattttatatgctacaatttatctttatataatagtagaaaa 1191202  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 38644262 - 38644189
Alignment:
Q  147 aaatttgatattttgataaatttcatcaagacaaattcaataacatcttatctgctatcatttatctttacataata 223  Q
    ||||||||||||| || |||||   | |||||||||||||   |||||||| |||||||||||||||||| ||||||    
T  38644262 aaatttgatatttagaaaaattcatttaagacaaattcaa---catcttatatgctatcatttatctttatataata 38644189  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 15337563 - 15337526
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatgcatat 265  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  15337563 aaaatatggtcaaagtaagttatgtgaataatgcatat 15337526  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 1054560 - 1054524
Alignment:
Q  228 aaaatatggtaaaagtatgttatgtgaataatgcata 264  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  1054560 aaaatatggtcaaagtatgtaatgtgaataatgcata 1054524  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 23636042 - 23636094
Alignment:
Q  145 aaaaatttgatattttgataaatttcatcaagacaaattcaataacatcttat 197  Q
    |||||||| ||||||| | |||||||||| ||  |||||||||||||||||||    
T  23636042 aaaaatttaatattttaaaaaatttcatcgaggtaaattcaataacatcttat 23636094  T

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