View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_63 (Length: 386)
Name: NF15941_high_63
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 124 - 364
Target Start/End: Complemental strand, 38195591 - 38195358
Alignment:
| Q |
124 |
ttaagtttagtctaagtttaatcttattttacttttatagtgactaaatataaaactaaaaactaannnnnnnnnnnnnnncaaacaagctctaatgact |
223 |
Q |
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| T |
38195591 |
ttaagtttagtctaagtttaatcttattttgcttttatagtgactaaatataaaactaaaaactaatttttttttttt---caaacaagctctaatgacc |
38195495 |
T |
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| Q |
224 |
aatattggagaaaatttatgttgagactaaatttaaaaactagtaattttgtagagacatgaaaacatattcannnnnnnnnnnnncactttgaagtttg |
323 |
Q |
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| T |
38195494 |
aatattggagaaaatttatgttgagactaaatttaaaaactagtaattttgtagagacatgaaaacatattca----atatatatacactttgaagtttg |
38195399 |
T |
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| Q |
324 |
aagcaaaatggtgacaaattaataatggagtgtgacacaca |
364 |
Q |
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| T |
38195398 |
aagcaaaatggtgacaaattcataatggagtgtgacacaca |
38195358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38195814 - 38195761
Alignment:
| Q |
1 |
ttacattttcgcataaaattcttcctgttttcaagatgagcgtataattctttc |
54 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38195814 |
ttacattttcgcataaaattcttcttgttttcaagatgagcgtataattctttc |
38195761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 38195613 - 38195583
Alignment:
| Q |
85 |
ttccctatgaagttcactacttttaagttta |
115 |
Q |
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| T |
38195613 |
ttccctatgaagttcactacttttaagttta |
38195583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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