View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_68 (Length: 379)
Name: NF15941_high_68
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 35842000 - 35842285
Alignment:
| Q |
18 |
atgaaagtaaaagaagacgacaaagaaagagggggaggtagtaggtctcacacacactcacacttattaatgtgttgatgatgtgtgtgtaagagattcc |
117 |
Q |
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| T |
35842000 |
atgaaagtaaaagaagacgacaaagaaagagggg-aggtagtaggtctcacacacactcacacttattaatgtgttgatgatgtgtgtgtaagagattcc |
35842098 |
T |
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| Q |
118 |
cagtctgtacccatgcatcgtattacgcgctcgccgctcgtcatatccctgccaattcaccttgaccttcgtgtaccaatgcagattactctattctttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35842099 |
cagtctgtacccatgcatcgtattacgcgctcgccgctcgtcatatccctgccaattcaccttgaccttcgtgtaccaatgcagattactctactctttt |
35842198 |
T |
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| Q |
218 |
gattccatgcacatgctaagttttcactgcatctattcccgttccaaaccttttttaatctaaatatcatccttgtaataacactac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35842199 |
gattccatgcacatgctaagttttcactgcatctattcccgttccaaaccttttttaatctaaatatcattcttgtaataacactac |
35842285 |
T |
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