View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_76 (Length: 356)
Name: NF15941_high_76
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 974885 - 974537
Alignment:
| Q |
5 |
caattggaatttgttgactgagatgggagatttgggtttattatcttccaaggcgttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaa |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974885 |
caattggaatttgttgactgatatgggagatttgggtttattatcttccaaggcgttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaa |
974786 |
T |
|
| Q |
105 |
gttgatacacaatgcaactccagttctaaagatatttcagatgtagctgtgtcagtttgttgagctcttattgttactacgttgtggccaacgtctgatt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
974785 |
gttgatacacaatgcaactccagttctaaagatatttcagatgtagctgtgtcagtttgttgagctcttattgttactacgttgtggccgacgtctgatt |
974686 |
T |
|
| Q |
205 |
gaaaggttcattcaattccgatatcataaaatttggcaatctatccacaaactggtactggttatatcacttatcacgtcttatattcttaatttgtatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
974685 |
gaaaggttcattcaattccgatatcataaaatttggcaatctatccacaaactggtactggttatatcacttatcacgtcttatattcttaatttgtatt |
974586 |
T |
|
| Q |
305 |
tcttttgtgccaggagggatacatatttattttccagctaattataaat |
353 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
974585 |
tcttttgcgcgaggagggatacatatttatttttcagctaattataaat |
974537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 8533253 - 8532915
Alignment:
| Q |
5 |
caattggaatttgttgactgagatgggagatttgggtttattatcttccaaggcgttgcatgctgaaagtgtaaaagcaaattataaacattgtgctgaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8533253 |
caattggaatttgttgactgagatgagagatttgggtttattatcttccaaggtgttgcatactgaaaatgtaaaagcaaattctaaacattgtgctgaa |
8533154 |
T |
|
| Q |
105 |
gttgatacacaatgcaactccagttctaaagatatttcagatgtagctgtgtcagtttgttgagctcttattgttactacgttgtggccaacgtctgatt |
204 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||| |||| |
|
|
| T |
8533153 |
gttgatacagaatgcaactccagttctgaagatatgtcagatgtagctgtgtcagtttgttgagctcttattgttactatgttgtagtcgacgtccgatt |
8533054 |
T |
|
| Q |
205 |
gaaaggttcattcaattccgatatcataaaatttggcaatctatccacaaactggtactggttatatcacttatcacgtcttatattcttaatttgtatt |
304 |
Q |
| |
|
| |||||||||||||| | ||||||||||| | |||| ||||||||||||||||||| || |||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
8533053 |
g-aaggttcattcaatccgtatatcataaaactcagcaagctatccacaaactggtactagt--tatcacttataatgtcttgtattcttaatttgtatt |
8532957 |
T |
|
| Q |
305 |
tcttttgtgccaggagggatacatat--ttattttccagctaat |
346 |
Q |
| |
|
|||| || ||||||||||||||| ||||||||| |||||| |
|
|
| T |
8532956 |
--ttttcagcaaggagggatacatattattattttccggctaat |
8532915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University