View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_79 (Length: 349)
Name: NF15941_high_79
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_79 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 183 - 339
Target Start/End: Complemental strand, 37823773 - 37823617
Alignment:
| Q |
183 |
caccaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatcattattcaacaacattttagccaaattctgaaactac |
282 |
Q |
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| T |
37823773 |
caccaacccaagaaaggatccaaggttgaatgactcgaatctagaaaaccccaactctaaatcattattcaacaacattttagccaaattctaaaactac |
37823674 |
T |
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| Q |
283 |
cattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgttctgtg |
339 |
Q |
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| T |
37823673 |
cattgtcgaaattatcaagtaatggaacgagaaaaggataagaattgatgttctgtg |
37823617 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 37823939 - 37823865
Alignment:
| Q |
16 |
catcaacaacaaattataagcatttctcttttgctgaaaatcaaa-----atgttgaaatatcatgaaaactcca |
85 |
Q |
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| T |
37823939 |
catcaacaacaaattatatgcatttctcttttgctgaaaatcaaacaaagatgttgaaatatcatgaacactcca |
37823865 |
T |
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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 33432762 - 33432837
Alignment:
| Q |
184 |
accaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatcattattcaacaaca |
259 |
Q |
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| T |
33432762 |
accaacccaagaaacgatccaaggttgaatgactcgaatctagaaaaccccaactctatatcctgattcaagaaca |
33432837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 33432839 - 33432893
Alignment:
| Q |
285 |
ttgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgttctgtg |
339 |
Q |
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| T |
33432839 |
ttgtcgaaattatcaagtaatcaaaggagaaaagaagaagaattgatgttctgtg |
33432893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 63943 - 64004
Alignment:
| Q |
184 |
accaacccaagaaaggatccaaggttgaatgactcgaatctagaaaacccaaactctaaatc |
245 |
Q |
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| T |
63943 |
accaacccaagaaaggattcaactttgaatgactcaaatctagaaaaccccaactctaaatc |
64004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 38490615 - 38490525
Alignment:
| Q |
249 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgttctgtg |
339 |
Q |
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| T |
38490615 |
attcaacaaccctttaaccaaattccaaaactacaattgttgaaattatcaagtaattgaaagagaaaagaagaataactgatgttttgtg |
38490525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 5021231 - 5021287
Alignment:
| Q |
249 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaat |
305 |
Q |
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| T |
5021231 |
attcaacaacacttaaaccaaattccaaaactaccattgtcgaaattttcaagtaat |
5021287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 27391001 - 27391085
Alignment:
| Q |
249 |
attcaacaacattttagccaaattctgaaactaccattgtcgaaattatcaagtaatggaacgagaaaaggagaagaattgatgtt |
334 |
Q |
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| T |
27391001 |
attcaacaacattttaaccaaattccaaaactaccgtgttcgaaattatctagttatcg-acgagaggagaagaagaattgatgtt |
27391085 |
T |
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