View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_8 (Length: 571)
Name: NF15941_high_8
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7739249 - 7739570
Alignment:
| Q |
1 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739249 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
7739348 |
T |
|
| Q |
101 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaacaagcaaacagacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7739349 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaataagcaaacagacc |
7739448 |
T |
|
| Q |
201 |
acaaatggaaatctggtactatactttctccacaaaaagttaagttggtgtaagaatgtgttagcttttatcatccttgttaaaaaccaatttccaccca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739449 |
acaaatggaaatctggtactatactttctccacaaaaagttaagttggtgaaagaatgtgttagcttttatcatccttgttaaaaaccaatttccaccca |
7739548 |
T |
|
| Q |
301 |
atgttgaatatcttagattccc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7739549 |
atgttgaatatcttagattccc |
7739570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 382 - 554
Target Start/End: Original strand, 7739643 - 7739816
Alignment:
| Q |
382 |
ttccgacttaagtaagttcaagaaaactttaaccattttggtgtatgacctaaaacctatcaacgaaaaacagaccatgtgcgcatacgcacatacacac |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7739643 |
ttccgacttaagtaagttcaagaaaactttaaccattttggtgtatgacctaaaacctatcaacgaaaa-cagaccatgtgcgcatacgcacatacacac |
7739741 |
T |
|
| Q |
482 |
gtgtgcctagaagtgtgcaaacacacttacatacatattg--acacacacacgcgcgcgcgcatgtagaagcatt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
|
|
| T |
7739742 |
gtgtgcctagaagtgtgcaaacacacttacatacatatcgacacacacacacacgcgcgcgcatgtagaagcatt |
7739816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38047514 - 38047744
Alignment:
| Q |
1 |
gtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcacacagag |
100 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| ||||| || ||| |||| ||||||||||||||||||| | |||||||||||| | | |
|
|
| T |
38047514 |
gtgcaaagcagagaaaatcataaaatc-aaataagctcaatgcagaaagattcaggaatggaacagaatcttgcacaaaaatcatctgaatcacacgggg |
38047612 |
T |
|
| Q |
101 |
cacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaacaagcaaacagacc |
200 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
38047613 |
gacaggaaaaagtggaagtgaaaacttttgctgttaaaacctaaaacacaatctccaaaagacaacat---------caaaaagaacaagcaaacagacc |
38047703 |
T |
|
| Q |
201 |
acaaatggaaatctggtactatactttctccacaaaaagtt |
241 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
38047704 |
acaaatggaaaattggtactatattttctccacaaaaagtt |
38047744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 2290717 - 2290761
Alignment:
| Q |
398 |
ttcaagaaaactttaa-ccattttggtgtatgacctaaaacctat |
441 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2290717 |
ttcaagaaaactttaagccattttggtgtatgacctaaaacctat |
2290761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University