View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_80 (Length: 348)
Name: NF15941_high_80
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_80 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 47544515 - 47544743
Alignment:
| Q |
14 |
aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac |
113 |
Q |
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| T |
47544515 |
aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac |
47544614 |
T |
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| Q |
114 |
ttgttatagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcgg |
213 |
Q |
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| T |
47544615 |
ttgttatagaaacctactacttggatcaatactctctccaaaccggaatgccttaagcttacgcagtcagaacatcggagactacttagattaagtttgg |
47544714 |
T |
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| Q |
214 |
atgatcgagattcaacctcggtgcattga |
242 |
Q |
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| T |
47544715 |
atgatcgagattcaacctcggtgcattga |
47544743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 47528411 - 47528730
Alignment:
| Q |
19 |
aacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaacttgtt |
118 |
Q |
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| T |
47528411 |
aacaattctgctgttgacaacagaatattaaaagctgatgttgaaacattaagagcgaaggtaagtccttgatttaactactttactagtaaaactggtt |
47528510 |
T |
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| Q |
119 |
atagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcggatgat |
218 |
Q |
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| T |
47528511 |
atagaagcctactacttggatcaaaattctctgcaatttg-aatgccttgagtttacgcagtcagcacattggtgactacttagattaagatcggatgct |
47528609 |
T |
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| Q |
219 |
cgagattcaacctcggtgcatt----------gaagaatcaaaatcaggcttattttgtgaactatccgatctgaatccaatatcaaccaatgcactgac |
308 |
Q |
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| T |
47528610 |
tgagattcaacctcggtgctttggattttcaagaagaatcagaatc-ttcttattttgtgaaatgtccgatctgaatccagtagtagccattgcactgat |
47528708 |
T |
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| Q |
309 |
tgcgtgaatgcagcaatattcc |
330 |
Q |
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| T |
47528709 |
tgcgtgaatccagcgatattcc |
47528730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 45123854 - 45123787
Alignment:
| Q |
260 |
tattttgtgaactatccgatctgaatccaatatcaaccaatgcactgactgcgtgaatgcagcaatat |
327 |
Q |
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| T |
45123854 |
tattttgtgaactatccgatccgaatccaatggtcaccaatgcattgacaacgtgaatgcaggaatat |
45123787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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