View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_88 (Length: 329)

Name: NF15941_high_88
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_88
NF15941_high_88
[»] chr3 (3 HSPs)
chr3 (92-216)||(13810991-13811115)
chr3 (282-313)||(13810855-13810886)
chr3 (92-132)||(12215767-12215807)
[»] scaffold0008 (2 HSPs)
scaffold0008 (102-172)||(116119-116189)
scaffold0008 (282-313)||(116316-116347)
[»] chr8 (2 HSPs)
chr8 (92-169)||(2499461-2499535)
chr8 (116-169)||(2503993-2504043)
[»] chr7 (2 HSPs)
chr7 (102-168)||(9691606-9691672)
chr7 (93-138)||(9805782-9805827)
[»] chr4 (1 HSPs)
chr4 (102-168)||(13557983-13558049)
[»] scaffold0186 (1 HSPs)
scaffold0186 (102-168)||(30580-30645)
[»] chr6 (2 HSPs)
chr6 (118-168)||(22043009-22043059)
chr6 (282-313)||(22042847-22042878)
[»] chr2 (2 HSPs)
chr2 (118-168)||(44353388-44353438)
chr2 (282-313)||(44353226-44353257)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 13811115 - 13810991
Alignment:
Q  92 ctacgggccatcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggagaaagcggttcgccgaagaatcgcg 191  Q
    ||||||||| ||||||||||||| |||||||| | |||| | | ||||||||||||||||||||||||||||  ||| ||| |||||||| |||||| ||    
T  13811115 ctacgggccgtcggagcaaatgatggagagagagatattcgccgtcgtagcaaatggcggagagtgagagataaagagagcagttcgccggagaatcacg 13811016  T
Q  192 tggagagagacatagagctgaaaca 216  Q
    |||||||||||| ||| ||||||||    
T  13811015 tggagagagacagagatctgaaaca 13810991  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 13810886 - 13810855
Alignment:
Q  282 atgtcataggtggtataagggggtgtatggaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  13810886 atgtcataggtggtataagggggtgtatggaa 13810855  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 12215767 - 12215807
Alignment:
Q  92 ctacgggccatcggagcaaatgaaggagagagggctattgg 132  Q
    ||||||||| ||||||||||||| |||||||| ||||||||    
T  12215767 ctacgggccgtcggagcaaatgacggagagagagctattgg 12215807  T

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Target: scaffold0008 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 116119 - 116189
Alignment:
Q  102 tcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggagaaagc 172  Q
    ||||| ||||||| |||||||| ||||| || | |||||||||||||||||||||||||||||||||||||    
T  116119 tcggaccaaatgacggagagagagctatcggccgtcgtagcaaatggcggagagtgagagatggagaaagc 116189  T

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Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Original strand, 116316 - 116347
Alignment:
Q  282 atgtcataggtggtataagggggtgtatggaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  116316 atgtcataggtggtataagggggtgtatggaa 116347  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 2499535 - 2499461
Alignment:
Q  92 ctacgggccatcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggagaa 169  Q
    ||||||||| ||||||||||||| ||||| || |||||||| | |||   ||||||||||||||||||||||||||||    
T  2499535 ctacgggccgtcggagcaaatgacggagaaagagctattggccgtcg---caaatggcggagagtgagagatggagaa 2499461  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 2503993 - 2504043
Alignment:
Q  116 ggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggagaa 169  Q
    |||||||| |||||||||| |||   ||||||||||||||||||||||||||||    
T  2503993 ggagagagagctattggtcgtcg---caaatggcggagagtgagagatggagaa 2504043  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 9691606 - 9691672
Alignment:
Q  102 tcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggaga 168  Q
    ||||| ||||||| |||||||| |||||  | | |||||||||||||||||||||||||||||||||    
T  9691606 tcggaccaaatgacggagagagagctatctgccgtcgtagcaaatggcggagagtgagagatggaga 9691672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 9805782 - 9805827
Alignment:
Q  93 tacgggccatcggagcaaatgaaggagagagggctattggtcatcg 138  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||    
T  9805782 tacgggccgtcggagcaaatgacggagagagagctattggccatcg 9805827  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 13557983 - 13558049
Alignment:
Q  102 tcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggaga 168  Q
    ||||| ||||||| |||||||| |||||  | | |||||||||||||||||||||||||||||||||    
T  13557983 tcggaccaaatgacggagagagagctatctgccgtcgtagcaaatggcggagagtgagagatggaga 13558049  T

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Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 30580 - 30645
Alignment:
Q  102 tcggagcaaatgaaggagagagggctattggtcatcgtagcaaatggcggagagtgagagatggaga 168  Q
    ||||| ||||||| |||||||| |||||  ||| ||||||||| |||||||||||||||||||||||    
T  30580 tcggaccaaatgacggagagagagctatctgtcgtcgtagcaa-tggcggagagtgagagatggaga 30645  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 22043059 - 22043009
Alignment:
Q  118 agagagggctattggtcatcgtagcaaatggcggagagtgagagatggaga 168  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  22043059 agagagagctatcggtcgttgtagcaaatggcggagagtgagagatggaga 22043009  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 22042878 - 22042847
Alignment:
Q  282 atgtcataggtggtataagggggtgtatggaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  22042878 atgtcataggtggtataagggggtgtatggaa 22042847  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 44353438 - 44353388
Alignment:
Q  118 agagagggctattggtcatcgtagcaaatggcggagagtgagagatggaga 168  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  44353438 agagagagctatcggtcgttgtagcaaatggcggagagtgagagatggaga 44353388  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 44353257 - 44353226
Alignment:
Q  282 atgtcataggtggtataagggggtgtatggaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  44353257 atgtcataggtggtataagggggtgtatggaa 44353226  T

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