View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_89 (Length: 328)
Name: NF15941_high_89
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_89 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 19172672 - 19172357
Alignment:
| Q |
1 |
caacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172672 |
caacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactcc |
19172573 |
T |
|
| Q |
101 |
gtcgttctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172572 |
gtcgttctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgc |
19172473 |
T |
|
| Q |
201 |
aaccacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaat |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172472 |
aatcacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatctctgacctccatcctttcatcttcaccaat |
19172373 |
T |
|
| Q |
301 |
cttgctcgttcatttc |
316 |
Q |
| |
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||||||||||| |||| |
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| T |
19172372 |
cttgctcgttcttttc |
19172357 |
T |
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