View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_9 (Length: 571)
Name: NF15941_high_9
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 90 - 555
Target Start/End: Original strand, 43568473 - 43568944
Alignment:
| Q |
90 |
ctatcagcatcatcatctccaattcaaacccaagacaacaagaatcactttcccttacaaaccaaaatgccaa------caacaaaaacaacccaaatcc |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43568473 |
ctatcagcatcatcatctccaattcaaaccgaagacaacaagaatcactttcccttacaaaccaaaatgccaacaccaacaacaaaaacaacccaaatcc |
43568572 |
T |
|
| Q |
184 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43568573 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
43568672 |
T |
|
| Q |
284 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttctttccttttcaaaaccctaacagacacttacttcgacgt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43568673 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttccttcctattcaaaaccctaacagacacttacttcgacgt |
43568772 |
T |
|
| Q |
384 |
cttcgcaacactcccgccaatcataccgccaggacccattgctgttcttggctttggtgccggctctactgccagtatcatccttaagttttaccccaat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43568773 |
cttcgcaacactcccgccaatcataccgccaggacccattgctgttcttggctttggtgccggctctactgccagtatcatccttaagttttaccccaat |
43568872 |
T |
|
| Q |
484 |
gcggttgtccatggctgggaacttgatacttctgtaattgatgttgcccgagagtttttcaatcttgacaag |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43568873 |
gcggttgtccatggctgggaacttgatacttctgtaattgatgttgcccgagagtttttcaatcttgacaag |
43568944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 43568407 - 43568437
Alignment:
| Q |
18 |
aagaatgtggatggtcctatctccctctctt |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43568407 |
aagaatgtggatggtcctatctccctctctt |
43568437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University