View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_high_94 (Length: 322)

Name: NF15941_high_94
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_high_94
NF15941_high_94
[»] chr2 (10 HSPs)
chr2 (112-296)||(33732569-33732760)
chr2 (112-293)||(44958116-44958305)
chr2 (112-296)||(16089822-16090012)
chr2 (115-296)||(3830900-3831086)
chr2 (133-296)||(14572995-14573166)
chr2 (112-296)||(37498862-37499056)
chr2 (112-296)||(36315561-36315753)
chr2 (112-296)||(6376238-6376424)
chr2 (111-296)||(37914235-37914427)
chr2 (171-296)||(24137151-24137287)
[»] chr4 (13 HSPs)
chr4 (112-296)||(28093095-28093287)
chr4 (112-296)||(49243815-49244006)
chr4 (109-296)||(21390952-21391146)
chr4 (112-296)||(3672274-3672466)
chr4 (112-296)||(7217765-7217957)
chr4 (112-296)||(6112630-6112821)
chr4 (112-296)||(44275706-44275897)
chr4 (114-296)||(35544912-35545102)
chr4 (112-296)||(46192359-46192551)
chr4 (112-296)||(45829257-45829448)
chr4 (174-291)||(51038768-51038893)
chr4 (250-292)||(43245522-43245564)
chr4 (219-296)||(52191314-52191391)
[»] chr3 (20 HSPs)
chr3 (112-296)||(21559561-21559753)
chr3 (112-296)||(34749897-34750089)
chr3 (110-292)||(46111941-46112131)
chr3 (113-297)||(22894679-22894870)
chr3 (112-296)||(51339783-51339972)
chr3 (112-301)||(43999984-44000181)
chr3 (112-296)||(30735495-30735686)
chr3 (114-296)||(36749406-36749596)
chr3 (112-293)||(48200688-48200877)
chr3 (112-296)||(36370337-36370529)
chr3 (110-296)||(38231293-38231486)
chr3 (112-211)||(29472901-29473000)
chr3 (219-296)||(29460660-29460737)
chr3 (219-296)||(29471512-29471589)
chr3 (109-296)||(39072275-39072464)
chr3 (111-288)||(20856152-20856334)
chr3 (112-296)||(39467101-39467292)
chr3 (112-296)||(50966131-50966310)
chr3 (112-296)||(51069266-51069445)
chr3 (171-274)||(53638157-53638267)
[»] chr8 (13 HSPs)
chr8 (112-296)||(30432339-30432530)
chr8 (112-296)||(36189216-36189406)
chr8 (120-295)||(44081781-44081964)
chr8 (112-296)||(31318805-31318997)
chr8 (112-293)||(18184556-18184744)
chr8 (112-296)||(42162598-42162790)
chr8 (112-293)||(12665347-12665537)
chr8 (109-292)||(10203668-10203859)
chr8 (112-292)||(43186031-43186218)
chr8 (110-290)||(33726017-33726205)
chr8 (219-275)||(42668895-42668951)
chr8 (219-291)||(31561-31633)
chr8 (232-291)||(3690729-3690788)
[»] chr6 (6 HSPs)
chr6 (112-296)||(3986905-3987096)
chr6 (112-296)||(3118046-3118238)
chr6 (112-296)||(13697569-13697759)
chr6 (113-296)||(14022934-14023124)
chr6 (112-296)||(24208444-24208635)
chr6 (112-296)||(15345659-15345848)
[»] chr7 (25 HSPs)
chr7 (110-296)||(36346562-36346755)
chr7 (112-296)||(26972202-26972394)
chr7 (112-296)||(28307494-28307686)
chr7 (112-290)||(31148296-31148481)
chr7 (112-293)||(34828069-34828256)
chr7 (112-296)||(42220963-42221154)
chr7 (111-296)||(7699881-7700074)
chr7 (111-296)||(7700079-7700272)
chr7 (111-296)||(7700277-7700470)
chr7 (111-296)||(7700475-7700668)
chr7 (112-296)||(34108426-34108618)
chr7 (114-296)||(30887700-30887890)
chr7 (112-296)||(45782659-45782851)
chr7 (112-298)||(5811163-5811356)
chr7 (112-296)||(13108148-13108338)
chr7 (114-292)||(21807324-21807509)
chr7 (172-290)||(23980137-23980262)
chr7 (112-278)||(36957447-36957619)
chr7 (112-218)||(46475109-46475216)
chr7 (112-205)||(29953571-29953665)
chr7 (219-291)||(38321014-38321086)
chr7 (174-296)||(15020282-15020408)
chr7 (174-261)||(20086690-20086784)
chr7 (231-262)||(29953661-29953692)
chr7 (112-187)||(42950036-42950111)
[»] chr5 (17 HSPs)
chr5 (110-296)||(39370927-39371121)
chr5 (112-296)||(40887941-40888133)
chr5 (110-296)||(2237276-2237470)
chr5 (112-296)||(13347128-13347320)
chr5 (111-296)||(1815618-1815807)
chr5 (112-285)||(14831555-14831736)
chr5 (132-296)||(9408058-9408230)
chr5 (115-296)||(27553376-27553564)
chr5 (112-259)||(31800595-31800749)
chr5 (219-298)||(33404550-33404629)
chr5 (112-218)||(42683684-42683791)
chr5 (113-296)||(4300544-4300734)
chr5 (171-296)||(17225319-17225449)
chr5 (112-296)||(19596067-19596258)
chr5 (172-292)||(19124532-19124657)
chr5 (177-287)||(41003915-41004031)
chr5 (219-293)||(12164254-12164328)
[»] chr1 (8 HSPs)
chr1 (112-298)||(34307137-34307331)
chr1 (114-296)||(39249864-39250054)
chr1 (112-292)||(2509028-2509216)
chr1 (112-296)||(46901734-46901926)
chr1 (109-296)||(19258669-19258863)
chr1 (112-296)||(28647353-28647544)
chr1 (219-291)||(10146971-10147043)
chr1 (219-292)||(29099821-29099893)
[»] scaffold0062 (1 HSPs)
scaffold0062 (109-292)||(6722-6913)
[»] scaffold0043 (1 HSPs)
scaffold0043 (112-292)||(87162-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (231-269)||(5943-5981)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 33732760 - 33732569
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  33732760 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttc 33732661  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33732660 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 44958305 - 44958116
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  44958305 ggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44958205 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 16090012 - 16089822
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||  ||||     
T  16090012 ggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt- 16089914  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctc 16089822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 3830900 - 3831086
Alignment:
Q  115 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 214  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  215 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||       ||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctc 3831086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 14573166 - 14572995
Alignment:
Q  133 atttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttt 224  Q
    ||||| |||||||| |||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||||       ||||||    
T  14573166 attttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttt 14573067  T
Q  225 taccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  14573066 tgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctc 14572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 37498862 - 37499056
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacc--catt 208  Q
    ||||||||||||||||||| | ||||| ||||||| |||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||  | ||    
T  37498862 ggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       ||||||| |||| ||||||||||||||||| |||||||||| |||||||||  |||||||||| || |||||||||||    
T  37498962 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctc 37499056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 36315753 - 36315561
Alignment:
Q  112 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| |||||  ||||||| |||||||||||| ||||| |   |||||||||| | |||| |||||| || ||||||  ||||    
T  36315753 ggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttt 36315654  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36315653 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 6376238 - 6376424
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||| ||||| ||||||| |  ||||||| | ||||| ||   |||||||||||||||| |||||| ||| ||||||||||||    
T  6376238 ggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttc 6376337  T
Q  212 atctctttgtt--tttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||  ||   |  |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||    
T  6376338 atctcttctttcaatggccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 37914235 - 37914427
Alignment:
Q  111 tggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||  | |||||||||| | |||| |||||| || ||||||| |||    
T  37914235 tggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtac-cagggtattttaatcatttcacatcacattatcaccccttt 37914333  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37914334 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctc 37914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 296
Target Start/End: Original strand, 24137151 - 24137287
Alignment:
Q  171 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggt----gtaaaagg 259  Q
    ||||||||||||||||| |||||| ||| ||| || ||||||||||||       |||||||  ||| ||||||||||||||||||||    || |||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagg 24137250  T
Q  260 gtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||| ||||||||| ||||| |||||||| |||||    
T  24137251 gtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 28093095 - 28093287
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||| ||||    
T  28093095 ggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28093195 catctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 28093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 296
Target Start/End: Original strand, 21390952 - 21391146
Alignment:
Q  109 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    |||||||||||||||||||||| | |||||||||||||  ||||||||||| ||||| ||  |||||||||||||||||||||||||||  |||| ||||    
T  21390952 tatggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcatt 21391051  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  21391052 ttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 21391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 7217957 - 7217765
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| ||||    
T  7217957 ggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     |||||||       ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  7217857 tatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctc 7217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 6112821 - 6112630
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||||||||||||   ||||||||||||  ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| || |||||    
T  6112821 ggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttc 6112722  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6112721 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctc 6112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 44275897 - 44275706
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||||| |||||| | ||||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||     
T  44275897 ggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttta 44275798  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       | |||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctc 44275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 35545102 - 35544912
Alignment:
Q  114 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccattttca 212  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | ||||       ||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctc 35544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 46192551 - 46192359
Alignment:
Q  112 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | |||||  ||||||| |||||||||||||||||||    |||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctc 46192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 45829257 - 45829448
Alignment:
Q  112 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | |||||  |||||||  ||||||||||||||| |     |||||||||| | |||| |||||| || ||||||| ||||    
T  45829257 ggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcacccctttt 45829355  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     |||||||       ||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||||||    
T  45829356 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  174 tattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 265  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||       |||||||  ||| |||||||| ||||||||||||| ||||  |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  266 gccacctaagatggttcatgtataag 291  Q
    |||||||||| |||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  250 gtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 52191314 - 52191391
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||  ||| |||||||| | ||||||| ||| ||| ||| ||||||||||||| |||| |||||||||| ||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctc 52191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 21559753 - 21559561
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 21559561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 34749897 - 34750089
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||  ||||||| ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34749897 ggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34749997 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 110 - 292
Target Start/End: Original strand, 46111941 - 46112131
Alignment:
Q  110 atggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||| |||||||||||||||  |||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||    
T  46111941 atggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttt 46112040  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    ||||||||||       ||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  46112041 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 113 - 297
Target Start/End: Complemental strand, 22894870 - 22894679
Alignment:
Q  113 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||| |||||| | |||| |||||||  ||||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcc 297  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcc 22894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 51339783 - 51339972
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||| ||   |||||||||||||||||||||||||||||||||| |||||    
T  51339783 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttc 51339882  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  51339883 atctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctc 51339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 301
Target Start/End: Complemental strand, 44000181 - 43999984
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||||||||||   ||||||||||||   |||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||    
T  44000181 ggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctccattc 301  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  44000081 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctattc 43999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 30735495 - 30735686
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggta-ttttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||| ||||||||||||||||| ||||    
T  30735495 ggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccc-tttt 30735593  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     || ||||       ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  30735594 tatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctc 30735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 36749596 - 36749406
Alignment:
Q  114 aaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttca 212  Q
    |||||||||||||||||   ||||||||||||   |||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||       ||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctc 36749406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 48200877 - 48200688
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||||    
T  48200877 ggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
    ||||||||       | ||||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||| |||||||    
T  48200777 catctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 36370337 - 36370529
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||| |   ||||||||||||   |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       |||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctc 36370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 110 - 296
Target Start/End: Complemental strand, 38231486 - 38231293
Alignment:
Q  110 atggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || || ||| |||    
T  38231486 atggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-att 38231388  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||| ||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38231387 ttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 29473000 - 29472901
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  29473000 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 29460737 - 29460660
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29460737 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 29471589 - 29471512
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29471589 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 296
Target Start/End: Original strand, 39072275 - 39072464
Alignment:
Q  109 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||||   ||||| ||||| |  | ||||||||||||||| |   ||||||||||||||     ||||| |||||||||||||    
T  39072275 tatggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccatt 39072369  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       ||||| | |||| |||||||||||| |||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  39072370 ttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctc 39072464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 288
Target Start/End: Original strand, 20856152 - 20856334
Alignment:
Q  111 tggaaaaagataggtagacatcatttt-tcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||  | ||||| |||| | ||||||| || ||||||||||||||| |   |||||||| |||||||||| |||| ||||||| || |||    
T  20856152 tggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatcctttt 20856250  T
Q  210 tc-atctcttt----gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 288  Q
    |  |||| |||    |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20856251 tatatctttttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 39467101 - 39467292
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||| ||| | ||||| ||||||| |  ||||||||| ||||| || ||| |||||||||||||| | |||| ||| |||||| |||||    
T  39467101 ggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttc 39467200  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       | |||||  ||| |||||||||| |||||||||||||||||||||||| || ||| | ||||| ||| |||| |||||    
T  39467201 atctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctc 39467292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 50966310 - 50966131
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  50966310 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 50966223  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  50966222 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 50966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 51069445 - 51069266
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||| |||||  ||||         ||||||||||||||| ||||||||   | ||||    
T  51069445 ggaaaaagataggtagacattctttttcatacacctcttatgtacatccccaaatatt---------ttagtaattttacattatatcatc---cttttt 51069358  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  51069357 catctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataagagctc 51069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  171 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 263  Q
    ||||||||||| |||||||||||| ||||||||||  | |||||||||       |||||||||||| |||||| | ||||||||||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  264 atgccacctaa 274  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 30432530 - 30432339
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||| | |||||| | ||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||    
T  30432530 ggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttc 30432431  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30432430 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 36189406 - 36189216
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||  |||||||||| |||||||| ||||||||||||| | |||||    
T  36189406 ggaaaaagataggtagacaccctttttcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttc 36189308  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189307 atctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 120 - 295
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  120 ataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt 218  Q
    ||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  219 -------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 295  Q
           ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 31318997 - 31318805
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||||  | |||||| |||||||||||||||||||||||||| ||||    
T  31318997 ggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||    
T  31318897 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctc 31318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 18184744 - 18184556
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||| |||||    
T  18184744 ggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttc 18184645  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
    |||||||       |||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||| ||||||||    
T  18184644 atctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||||||||||   ||||||||||||   ||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       |||||||  |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 12665537 - 12665347
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcaccc-attt 209  Q
    ||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||| ||  |||||||||||||||||||||||||||||||||||  |||    
T  12665537 ggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
    | |||||||       ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12665437 ttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 10203859 - 10203668
Alignment:
Q  109 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 207  Q
    |||||||||||||||||||||| | ||||||||||| | ||||||||||||| ||||||||  || |||||||||||||||| ||||||||| ||||| |    
T  10203859 tatggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctt 10203760  T
Q  208 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||||||||||       | |||||  |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  10203759 tttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 43186218 - 43186031
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||||| ||||||||||||||  |||||    
T  43186218 ggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttc 43186119  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||| ||       ||||||| |||| | |||||||||||||  |||||||||| || ||||||||||||  ||||| ||||||||||    
T  43186118 atcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 33726205 - 33726017
Alignment:
Q  110 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcaccca-tt 208  Q
    ||||||||||||||||||||| | ||||| ||||||| |  ||||||||  ||||| ||  ||||||||||||||||| |||||| ||| ||| ||| ||    
T  33726205 atggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactt 33726106  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 290  Q
    ||||||||||       ||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||  ||||| ||||||||    
T  33726105 ttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 42668895 - 42668951
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 275  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  42668895 tgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 31561 - 31633
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 291  Q
    ||||||| |||| |||||||| ||| ||||||||| |||| |||||||| |||||||||||| ||| ||||||    
T  31561 tgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 3690729 - 3690788
Alignment:
Q  232 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 291  Q
    |||||||| ||||||||| | | ||||| |||||| ||||||||||| ||||||||||||    
T  3690729 tgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 3986905 - 3987096
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||||||||||||||||||||||||||    ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || |||||    
T  3986905 ggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttc 3987004  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3987005 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 3118046 - 3118238
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||| ||||    
T  3118046 ggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     |||| ||       ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118146 tatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctc 3118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 13697759 - 13697569
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||   | |||||||||||||||| ||||||||||||||| |||||    
T  13697759 ggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttc 13697660  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       |||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||||||||| ||||||||||||||    
T  13697659 atctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 296
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  113 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 212  Q
    |||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||       ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 24208635 - 24208444
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||| ||||| ||||||| || || |||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  24208635 ggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttc 24208536  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||       ||||||| |||| | ||||||||||||||||||||||||  |||||| ||||||| ||||||| |||||||| |||||    
T  24208535 atctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 15345659 - 15345848
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| |||||||  ||| |||| |||||||| | ||||||||||||||  |||||    
T  15345659 ggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttc 15345758  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||| ||       ||||||| ||||||||||||||  ||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  15345759 atcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctc 15345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 110 - 296
Target Start/End: Original strand, 36346562 - 36346755
Alignment:
Q  110 atggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| || ||    
T  36346562 atggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttt 36346660  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36346661 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 36346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 26972202 - 26972394
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  26972202 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  211 catctct-------ttgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||        ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26972302 catctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 26972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 28307494 - 28307686
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||| ||||    
T  28307494 ggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28307594 catctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 31148481 - 31148296
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||||||||||||   ||||||||||||| |||||  ||||||||| | ||  |  ||||||||||||||||||||||||||||||||||||||    
T  31148481 ggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttc 31148382  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 290  Q
    |||||||       ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148381 atctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 293
Target Start/End: Complemental strand, 34828256 - 34828069
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||| |  |||||    
T  34828256 ggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttc 34828157  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
    |||||||       ||||||| ||||||||||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||    
T  34828156 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 42220963 - 42221154
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| ||||    
T  42220963 ggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
     || ||||       ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 7699881 - 7700074
Alignment:
Q  111 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7699881 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7699980  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7699981 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 7700079 - 7700272
Alignment:
Q  111 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700079 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700178  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700179 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 7700277 - 7700470
Alignment:
Q  111 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700277 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700376  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700377 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 7700475 - 7700668
Alignment:
Q  111 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattt 209  Q
    |||||||||||||||| ||| | ||||||||||||| ||||| ||||||  ||||| || |||||||||||||||||||| |||||||||||| || |||    
T  7700475 tggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttt 7700574  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    | |||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700575 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 34108618 - 34108426
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||| ||| | ||||||||||||  ||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  34108618 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       |||||||  ||  |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34108518 catctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 30887890 - 30887700
Alignment:
Q  114 aaaaagataggta-gacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 212  Q
    ||||||||| ||| |||| | ||||||||||||  ||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||       ||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30887790 tctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 45782659 - 45782851
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||| ||||||   |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  45782659 ggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       |||||||  |||||||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||    
T  45782759 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 298
Target Start/End: Original strand, 5811163 - 5811356
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||| ||||||| |  ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| |||||    
T  5811163 ggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttc 5811262  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 298  Q
    |||||||       ||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5811263 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctcca 5811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 13108338 - 13108148
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||| |||||||  | ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||| |    
T  13108338 ggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-c 13108240  T
Q  212 atctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||        |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 292
Target Start/End: Original strand, 21807324 - 21807509
Alignment:
Q  114 aaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcat 213  Q
    |||||||||||| |||| | ||||| ||||||  || || ||||||||| || ||  ||||||||||||||||| |||| | ||||||| ||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  214 ctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||||       | ||||| |||| | |||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  21807424 ctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 23980262 - 23980137
Alignment:
Q  172 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 264  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| |||||||||||||||||||||||||||||||||    
T  23980262 ggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgta 23980163  T
Q  265 tgccacctaagatggttcatgtataa 290  Q
    ||||||||| | ||||| ||||||||    
T  23980162 tgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 36957619 - 36957447
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    |||||||||||||||||||  |||||| |||||||  | || ||||||| |||| ||  |||||||||||||||||||||| | || |||| ||||||||    
T  36957619 ggaaaaagataggtagacacaattttttatacacctttcatatacaccc-atgtgttgggggtattttagtaattttacattacattatcatccattttc 36957521  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatg 278  Q
    |||||||       | |||||  |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  36957520 atctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 46475216 - 46475109
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctggg-tattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||| ||||||| || ||||||| | ||||| || |||| |||||||||||||| |||||| ||| |||||| ||||    
T  46475216 ggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccctttt 46475117  T
Q  211 catctctt 218  Q
    ||||||||    
T  46475116 catctctt 46475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 29953571 - 29953665
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcaccc 205  Q
    ||||||||||||||||||| | ||||||||||||  |||||||| ||  |||||||||  || ||||| ||||||||||||||||||||||||||    
T  29953571 ggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 38321086 - 38321014
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 291  Q
    ||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||||||||| |||||||||    
T  38321086 tgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 15020408 - 15020282
Alignment:
Q  174 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 266  Q
    |||||||||||||| |||||||||| |||||| ||| | ||||||       ||||||| |||  |||||||||||||||  ||||||||||| ||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatg 15020312  T
Q  267 ccacctaagatggttcatgtataagagctc 296  Q
    ||||||| | ||||| |||||||| |||||    
T  15020311 ccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  174 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 261  Q
    |||||||||||||| |||||| |||||||||| |||| |||||||       ||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 262
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  231 gtgtcacaaatgtgtgtgggtgtaaaagggtg 262  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 42950036 - 42950111
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattt 187  Q
    ||||||||||||||||||| | ||||| |||||||    ||||||||||||||| |   |||||||||||||||||    
T  42950036 ggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 110 - 296
Target Start/End: Complemental strand, 39371121 - 39370927
Alignment:
Q  110 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||    
T  39371121 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttt 39371022  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39371021 ttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 40887941 - 40888133
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||| || ||||   |||||||||||||||||||||||||||| ||||| ||||    
T  40887941 ggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  40888041 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctc 40888133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 296
Target Start/End: Complemental strand, 2237470 - 2237276
Alignment:
Q  110 atggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    ||||||||||||||||||||| | ||||||||||||  |||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||| ||    
T  2237470 atggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttt 2237371  T
Q  209 ttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||||       ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2237370 ttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 13347320 - 13347128
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||| ||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctc 13347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 1815618 - 1815807
Alignment:
Q  111 tggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||||||||||| | ||||||||| |  |   |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  1815618 tggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1815715 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctc 1815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 285
Target Start/End: Complemental strand, 14831736 - 14831555
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||| ||| | ||||||||||||  |||||||||||||| | |||||  |||||||| | |||||||||||||||||||||||| ||||    
T  14831736 ggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatg 285  Q
    ||||||||       ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14831636 catctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 132 - 296
Target Start/End: Original strand, 9408058 - 9408230
Alignment:
Q  132 catttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgttt 223  Q
    ||||||||||||||  |||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||    
T  9408058 catttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgttt 9408157  T
Q  224 ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    || |||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  9408158 ttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctc 9408230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 27553376 - 27553564
Alignment:
Q  115 aaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatc 214  Q
    |||| |||| |||||| | ||||||||||||| ||||||||||||| |||| ||  | |||||||||||||||||||||| || ||||||  ||||| ||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttc 27553475  T
Q  215 tctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||       ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  27553476 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctc 27553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 31800749 - 31800595
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||| ||||| | ||||||||||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| |||||    
T  31800749 ggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttc 31800650  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagg 259  Q
    |||| ||       | ||||| |||||||||| ||||||||||||||||||||||    
T  31800649 atcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 33404550 - 33404629
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 298  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  33404550 tgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctcca 33404629  T

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Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 42683791 - 42683684
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||| |||||| ||||  ||||||||||||||||||||||||||||| || || ||||    
T  42683791 ggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  211 catctctt 218  Q
    ||||||||    
T  42683691 catctctt 42683684  T

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Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 296
Target Start/End: Original strand, 4300544 - 4300734
Alignment:
Q  113 gaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttca 212  Q
    ||||||||| | |||||||| ||||| ||||| | || ||||||||| ||||| ||  || ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||       ||||||| |||  |||||||||| ||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctc 4300734  T

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Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 17225449 - 17225319
Alignment:
Q  171 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 263  Q
    ||||||||||||||||| |||||| |||||||||  ||||||||||||       |||||||  ||| ||||||||||||||||||||||||||  | ||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagt 17225352  T
Q  264 atgccacctaagatggttcatgtataagagctc 296  Q
    |||||||||||  ||||||||||||||||||||    
T  17225351 atgccacctaaagtggttcatgtataagagctc 17225319  T

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Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  112 ggaaaaagataggtagacatcatttttc-atacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| |||||  | | ||| |||||||||||||||||| |   ||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    || |||||       ||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

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Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 19124532 - 19124657
Alignment:
Q  172 ggtattttagtaattttacatcatatcatcacccattttcatctctt------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 265  Q
    ||||||||||||||||||||||||||||||||    |||||||||||      ||||||| ||||  ||||||| ||||||||||||| |||  ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttctttaatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtat 19124630  T
Q  266 gccacctaagatggttcatgtataaga 292  Q
    |||| ||||||| || |||||||||||    
T  19124631 gccatctaagatagtccatgtataaga 19124657  T

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Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  177 tttagtaattttacatcatatcatcacccattttcatctctttgt------ttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccac 270  Q
    |||||||||||||||||| ||||||| || |||| || ||||| |      |||| |||| ||||| |||||||| || |||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccac 41004014  T
Q  271 ctaagatggttcatgta 287  Q
    ||||  |||||||||||    
T  41004015 ctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 12164328 - 12164254
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 293  Q
    ||||||| |||| || ||||| |||||||| || | ||||  ||| |||||||||||||||||||||||||||||    
T  12164328 tgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 298
Target Start/End: Original strand, 34307137 - 34307331
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||    
T  34307137 ggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 298  Q
    ||| ||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34307237 catatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctcca 34307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 296
Target Start/End: Original strand, 39249864 - 39250054
Alignment:
Q  114 aaaaagataggtagacatcatttttcatacaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttca 212  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  213 tctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||       ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 39250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 292
Target Start/End: Complemental strand, 2509216 - 2509028
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    |||||||||||||||||||   ||||||||||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||| ||||| ||||    
T  2509216 ggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    ||||||||       ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  2509116 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 46901734 - 46901926
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcacccatttt 210  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||| ||||||||   | |||||| |||||||||||||||||||||||||| ||||    
T  46901734 ggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  211 catctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    ||||||||       ||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  46901834 catctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 296
Target Start/End: Original strand, 19258669 - 19258863
Alignment:
Q  109 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccatt 208  Q
    |||| ||||||||||||||||| | ||||| ||||| | || ||||||||||||||| ||  |  ||||||| |||||| |||||| |||| ||||| ||    
T  19258669 tatgaaaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccacccctt 19258768  T
Q  209 ttcatctcttt-------gtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||||||||||       |||||| |||| |||||||||| | ||||||||||||| |||||||||||||| |||||||| |||||||| |||||    
T  19258769 ttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctc 19258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 28647544 - 28647353
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 211  Q
    ||||||||||||||||||| | ||||| ||||| | || ||||||| ||||||| ||  |  ||||||| |||||| |||||| |||| ||||| |||||    
T  28647544 ggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttc 28647445  T
Q  212 atctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 296  Q
    |||| ||       ||||||| |||  | |||||||| ||||||||||||||| | ||||||| |||| || |||||||||||||| |||||    
T  28647444 atctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 10147043 - 10146971
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 291  Q
    ||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  10147043 tgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 29099893 - 29099821
Alignment:
Q  219 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||||||  ||| ||||||||||||||||||  || |||| |||||||||| ||||| ||||| ||||||||||    
T  29099893 tgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 6913 - 6722
Alignment:
Q  109 tatggaaaaagataggtagacatcatttttcatacaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccat 207  Q
    |||||||||||||||||||| | | ||||||||||||  ||||||||||||| ||||||||  || ||||| |||||||||||||||||||||||||| |    
T  6913 tatggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctt 6814  T
Q  208 tttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6813 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 292
Target Start/End: Original strand, 87162 - 87350
Alignment:
Q  112 ggaaaaagataggtagacatcatttttcatacaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatat--catcacccattt 209  Q
    ||||||||||||||||||| | |||||||||||||  ||||||||||||||||| ||  ||||||||||||||||||| || ||||  ||||||   |||    
T  87162 ggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttt 87261  T
Q  210 tcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 292  Q
    |||||||||       ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  231 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 269  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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