View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_96 (Length: 322)
Name: NF15941_high_96
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_96 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 5665221 - 5665524
Alignment:
| Q |
9 |
gaaatgaaactatatactggacaatgatggagatttctacttttctatctaggtttttggtagaaagggaatttcatttattctttcacatattatgtca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5665221 |
gaaatgaaactatatactggacaatgattgagatttctacttttctatctaggtttttggtagaaagagaatttcatttattctttcacatattatgtca |
5665320 |
T |
|
| Q |
109 |
tggcatgttgttataattcattttatacaattatatgccccttatatatgtgacctgcatttaaaacgatcataacaaagactagggataatcagcaaaa |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5665321 |
tggcatgttgctataattcattttatacaattatatgccccttatatatgtgacctgcatttaaaacgatcataacaatgactagggataatcagcaaaa |
5665420 |
T |
|
| Q |
209 |
agtaactatttgt-------nnnnnnnnnnncagcaaaaatagctaaacaaaatttaatgaaacaatgagtgatagtgtgaatatgaccaggtgcacaca |
301 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5665421 |
agtaactatttgtaaaaaaaaaaaaaaaaaacagcaaaaatagctaaacaaaatttaatgaaacaatgagtgatagtgtgaatatgaccaggtgcacaca |
5665520 |
T |
|
| Q |
302 |
tgag |
305 |
Q |
| |
|
|||| |
|
|
| T |
5665521 |
tgag |
5665524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University