View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_high_97 (Length: 320)
Name: NF15941_high_97
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 35447804 - 35447511
Alignment:
| Q |
15 |
caaaaacatgattctgagtaaccgccttcatccctcttctcaaaatgttccaaccatctttgtgtatacctatacctttttggccttccacctttagcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447804 |
caaaaacatgattctgagtaaccgccttcatccctcttctcaaaatgttccaaccatctttgtgtatacctatacctttttggccttccacctttagcca |
35447705 |
T |
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| Q |
115 |
tataaacacgtccatcacggttccttgaatgtctatagtaattagcaatatccaaaggctcaactagtcttctaaacttcgttcctatattcttccaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447704 |
tataaacacgtccatcacggttccttgaatgtctatagtaattagcaatatccaaaggctcaactagtcttctaaacttcgttcctatattcttccaatc |
35447605 |
T |
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| Q |
215 |
ttcgttcccttctaattcttctggaagttcatagtttaacagcttttcgattatctcatcccatactcctgcaagttctagcctctgcacattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447604 |
ttcgttcccttctaattcttctggaagttcatagtttaacagcttttcgattatctcatcccatactcctgcaagttctagcctctgcacattt |
35447511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 36881909 - 36882205
Alignment:
| Q |
15 |
caaaaacatgattctgagtaaccgccttcatccctcttctcaaaatgttccaaccatctttgtgtatacctatacctttttggccttccacctttagcca |
114 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
36881909 |
caaaaacatgactctgagtaaccaccttctcccctcttctcagcatgttccaaccatctttgtgtatacctatacctttttggttttcctcctttagcca |
36882008 |
T |
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| Q |
115 |
tataaacacgtccatcacggttcc--ttgaatgtctatagtaattagcaatatccaaaggctcaactagtcttctaaacttcgttcctatattcttccaa |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| |
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| T |
36882009 |
aataaacacgtccatcacggttccaattgaatgtctatagtaattagcaatatctaaaggctcaactagtcttctaaactttgttcctatctcgacccat |
36882108 |
T |
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| Q |
213 |
ttttcgttcccttctaattcttctggaagttcatagtttaacagcttttcgattatctcatcccatactcctgcaag-ttctagcctctgcacattt |
308 |
Q |
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| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
36882109 |
tctttcttcccttcaaattcttctggtagttcatagtttaatagcttttcgattatctcatcccatgctcctgcaagtttctagcctcttcacattt |
36882205 |
T |
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