View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15941_high_99 (Length: 319)
Name: NF15941_high_99
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_high_99 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 41832871 - 41832589
Alignment:
| Q |
14 |
aaaatcaagtttaatcgcataaataaatgtaatcaagggggtaatagttttgtaatataaaatactagtccatacctgcatgaatacaagcactaactac |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41832871 |
aaaatcaagtttaatcgcataaat----gtaatcaagggggtaatagttttgtaatataa--tactagtccatacctgcatgaatacaagcaccaactac |
41832778 |
T |
|
| Q |
114 |
aaggaaggtgtagcccaagctgagaaaaagggaacacaagttgatgtgtcgtagggaatggaaagtgggaagctgagacaaaattatcatgactaatgtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41832777 |
aaggaaggtgtagcccaagctgagaaaaagggaacacaagttgatgtgtcgtagggaatggaaagtgggaagctgagacaaaattatcatgactactgtc |
41832678 |
T |
|
| Q |
214 |
accattgctatgaagtcgtacagtttcagtgctccatgaggtgcaatattggagtacacaatctaaaagaaaatactaccaattataac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41832677 |
accattgctatgaagtcgtacagtttcagtgctccatgaggtgcaatattggagtacacgatctaaaagaaaatactaccaattataac |
41832589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 41839058 - 41838776
Alignment:
| Q |
14 |
aaaatcaagtttaatcgcataaataaatgtaatcaagggggtaatagttttgtaatataaaatactagtccatacctgcatgaatacaagcactaactac |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41839058 |
aaaatcaagtttaatcgcataaat----gtaatcaagggggtaatagttttgtaatataa--tactagtccatacctgcatgaatacaagcaccaactac |
41838965 |
T |
|
| Q |
114 |
aaggaaggtgtagcccaagctgagaaaaagggaacacaagttgatgtgtcgtagggaatggaaagtgggaagctgagacaaaattatcatgactaatgtc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41838964 |
aaggaaggtgtagcccaagctgagaaaaagggaacacaagttgatgtgtcgtagggaatggaaagtgggaagctgagacaaaattatcatgactactgtc |
41838865 |
T |
|
| Q |
214 |
accattgctatgaagtcgtacagtttcagtgctccatgaggtgcaatattggagtacacaatctaaaagaaaatactaccaattataac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41838864 |
accattgctatgaagtcgtacagtttcagtgctccatgaggtgcaatattggagtacacgatctaaaagaaaatactaccaattataac |
41838776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University