View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_100 (Length: 325)
Name: NF15941_low_100
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_100 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 3407726 - 3408024
Alignment:
| Q |
1 |
aacgccaacaccacaaacctttactgatagtttgaagttcgtctaagaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaactcagatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3407726 |
aacgccaacaccacaaacctctactgatagtttgaagttcgtttaagaggtaagtaaagtctggtcaacaactgttccattcaggaatcaaactcagatc |
3407825 |
T |
|
| Q |
101 |
ctagtgaaaaaatcgccttttgatagagctcgtcagtcacttgagctcaattgtttgatttaattgtatccnnnnnnnnaacaaagggaactttatcgta |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||| || |
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| T |
3407826 |
ctcgtgaaaaaatcgccttttgatagagctcgtcagtcacttgagttcaattgtttgatttaattgtattc-tttttttaacaaaaggaactttatcata |
3407924 |
T |
|
| Q |
201 |
atgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaaacagactgatgtgtttaaactaaatttgatatactcgtaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3407925 |
atgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaa----actgatgtgtttaaactaaatttgatatactcgtaaa |
3408020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 5404489 - 5404443
Alignment:
| Q |
48 |
aggtaagtaaagtctggtcaacaattgttccattcaggaatcaaact |
94 |
Q |
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| T |
5404489 |
aggtaagtaaagtctggccaataattgttcccatcaggaatcaaact |
5404443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 34964236 - 34964188
Alignment:
| Q |
47 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaactc |
95 |
Q |
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| T |
34964236 |
gaggtaagtaaagtctggtcaataattgttcccattaggaatcgaactc |
34964188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 10007991 - 10008036
Alignment:
| Q |
47 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaa |
92 |
Q |
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|||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
10007991 |
gaggtaagtaaagtcttgtcaagaattgttccaaccaggaatcaaa |
10008036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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