View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_102 (Length: 322)

Name: NF15941_low_102
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_102
NF15941_low_102
[»] chr3 (44 HSPs)
chr3 (64-294)||(4169039-4169259)
chr3 (131-296)||(42637956-42638121)
chr3 (124-297)||(3823594-3823768)
chr3 (124-297)||(3785905-3786078)
chr3 (131-286)||(19280152-19280306)
chr3 (124-290)||(1705663-1705827)
chr3 (131-296)||(26308640-26308805)
chr3 (132-297)||(44080199-44080364)
chr3 (142-283)||(5341833-5341974)
chr3 (145-297)||(9710738-9710884)
chr3 (124-255)||(22432315-22432446)
chr3 (131-253)||(31545603-31545725)
chr3 (174-297)||(11509846-11509969)
chr3 (131-290)||(19624256-19624414)
chr3 (125-290)||(27707624-27707788)
chr3 (124-240)||(42481300-42481416)
chr3 (150-227)||(27335402-27335479)
chr3 (140-228)||(13358101-13358189)
chr3 (169-297)||(23163271-23163400)
chr3 (149-289)||(27079314-27079453)
chr3 (149-289)||(27085111-27085250)
chr3 (124-289)||(34627292-34627453)
chr3 (150-227)||(27365008-27365085)
chr3 (224-309)||(31545714-31545799)
chr3 (179-286)||(41571797-41571904)
chr3 (139-201)||(11501309-11501371)
chr3 (150-227)||(27326047-27326124)
chr3 (150-227)||(27332284-27332361)
chr3 (140-215)||(39126189-39126263)
chr3 (227-300)||(26308575-26308648)
chr3 (224-273)||(34164326-34164375)
chr3 (224-290)||(3786060-3786125)
chr3 (224-290)||(3823750-3823815)
chr3 (159-209)||(23163787-23163837)
chr3 (227-289)||(27040683-27040745)
chr3 (223-301)||(33488333-33488411)
chr3 (224-290)||(39126263-39126329)
chr3 (223-290)||(18733572-18733638)
chr3 (246-296)||(5341996-5342046)
chr3 (147-185)||(11509989-11510027)
chr3 (224-290)||(22432428-22432494)
chr3 (21-96)||(3823797-3823869)
chr3 (224-288)||(18733430-18733495)
chr3 (237-297)||(11501251-11501310)
[»] chr2 (12 HSPs)
chr2 (126-297)||(43900471-43900642)
chr2 (23-259)||(1400667-1400901)
chr2 (131-297)||(30906051-30906217)
chr2 (139-297)||(45305910-45306067)
chr2 (124-254)||(28527316-28527445)
chr2 (51-227)||(33667328-33667506)
chr2 (124-290)||(7378463-7378626)
chr2 (224-290)||(1400719-1400785)
chr2 (224-290)||(28527268-28527334)
chr2 (224-297)||(33667413-33667486)
chr2 (246-297)||(41212426-41212477)
chr2 (150-204)||(34175155-34175209)
[»] chr6 (39 HSPs)
chr6 (140-289)||(33815025-33815174)
chr6 (126-296)||(10304695-10304865)
chr6 (124-297)||(22608304-22608476)
chr6 (141-296)||(3222375-3222530)
chr6 (124-236)||(138708-138820)
chr6 (124-236)||(146729-146841)
chr6 (131-300)||(23595094-23595253)
chr6 (132-289)||(3620761-3620917)
chr6 (151-290)||(9474585-9474718)
chr6 (124-235)||(9068411-9068521)
chr6 (124-188)||(2430600-2430664)
chr6 (133-228)||(2834974-2835069)
chr6 (202-290)||(11108147-11108235)
chr6 (224-297)||(138653-138726)
chr6 (224-297)||(146674-146747)
chr6 (224-297)||(9068503-9068576)
chr6 (224-296)||(30056065-30056138)
chr6 (224-280)||(2430650-2430706)
chr6 (228-297)||(10304639-10304707)
chr6 (229-297)||(7915696-7915764)
chr6 (230-285)||(2365649-2365704)
chr6 (224-290)||(2430553-2430618)
chr6 (246-296)||(11108109-11108159)
chr6 (229-290)||(7706935-7706996)
chr6 (21-93)||(2430498-2430568)
chr6 (224-290)||(7706809-7706876)
chr6 (27-96)||(11108067-11108133)
chr6 (224-275)||(14524091-14524142)
chr6 (227-290)||(24386312-24386375)
chr6 (20-96)||(2835108-2835181)
chr6 (226-300)||(3222532-3222606)
chr6 (246-296)||(23595261-23595311)
chr6 (224-297)||(2835060-2835133)
chr6 (224-273)||(15341435-15341484)
chr6 (224-273)||(15341858-15341907)
chr6 (131-188)||(20084678-20084735)
chr6 (124-188)||(7706862-7706926)
chr6 (237-297)||(9068336-9068395)
chr6 (148-188)||(24386283-24386323)
[»] chr8 (27 HSPs)
chr8 (124-300)||(5321955-5322131)
chr8 (131-296)||(38606828-38606993)
chr8 (152-300)||(29367076-29367224)
chr8 (124-297)||(31273555-31273728)
chr8 (141-300)||(5573720-5573879)
chr8 (124-283)||(15714688-15714847)
chr8 (124-297)||(1251470-1251642)
chr8 (141-290)||(26493347-26493493)
chr8 (131-272)||(1240901-1241041)
chr8 (140-290)||(31596745-31596894)
chr8 (194-279)||(33286178-33286263)
chr8 (150-290)||(15233168-15233318)
chr8 (165-259)||(32959541-32959635)
chr8 (224-297)||(15714633-15714706)
chr8 (226-297)||(38606766-38606837)
chr8 (224-297)||(5573877-5573951)
chr8 (131-256)||(24575907-24576023)
chr8 (140-231)||(6809804-6809895)
chr8 (224-290)||(5321907-5321973)
chr8 (224-273)||(40502175-40502224)
chr8 (224-275)||(24919659-24919710)
chr8 (251-297)||(24576180-24576226)
chr8 (224-278)||(24919871-24919925)
chr8 (246-300)||(28700080-28700133)
chr8 (131-228)||(24537982-24538078)
chr8 (224-273)||(40502387-40502436)
chr8 (224-296)||(26914631-26914702)
[»] chr7 (30 HSPs)
chr7 (140-296)||(20556710-20556866)
chr7 (124-300)||(31303393-31303569)
chr7 (124-279)||(4290788-4290942)
chr7 (124-297)||(18312770-18312942)
chr7 (124-273)||(21589590-21589739)
chr7 (124-289)||(21548404-21548568)
chr7 (131-289)||(15958313-15958472)
chr7 (126-289)||(22740654-22740817)
chr7 (131-294)||(5083792-5083954)
chr7 (131-236)||(28804990-28805094)
chr7 (150-227)||(46943761-46943839)
chr7 (150-297)||(32964696-32964852)
chr7 (223-300)||(32964848-32964925)
chr7 (224-301)||(5083727-5083803)
chr7 (224-297)||(21589721-21589794)
chr7 (224-300)||(28805116-28805192)
chr7 (224-290)||(21548550-21548616)
chr7 (224-290)||(22033158-22033224)
chr7 (131-196)||(5174910-5174975)
chr7 (224-301)||(15958247-15958324)
chr7 (226-290)||(31303553-31303616)
chr7 (140-227)||(27523496-27523583)
chr7 (192-234)||(2887188-2887230)
chr7 (224-300)||(20556867-20556943)
chr7 (246-289)||(28804933-28804976)
chr7 (224-297)||(18312924-18312997)
chr7 (227-290)||(4290927-4290990)
chr7 (246-300)||(22740096-22740150)
chr7 (25-96)||(28804882-28804950)
chr7 (171-227)||(22033095-22033151)
[»] chr5 (26 HSPs)
chr5 (124-254)||(35922718-35922848)
chr5 (124-289)||(22169408-22169573)
chr5 (124-289)||(13312550-13312714)
chr5 (147-279)||(38521984-38522115)
chr5 (139-289)||(43461709-43461858)
chr5 (127-294)||(33958976-33959142)
chr5 (124-259)||(42034739-42034872)
chr5 (139-290)||(19621481-19621631)
chr5 (192-297)||(36169394-36169499)
chr5 (146-297)||(31189519-31189671)
chr5 (153-290)||(43262708-43262859)
chr5 (150-227)||(30704398-30704476)
chr5 (224-300)||(15221662-15221738)
chr5 (150-227)||(7156105-7156182)
chr5 (148-203)||(30045885-30045940)
chr5 (224-297)||(13312696-13312769)
chr5 (124-192)||(2477302-2477370)
chr5 (246-300)||(35922648-35922702)
chr5 (224-300)||(35922830-35922906)
chr5 (131-186)||(15221618-15221673)
chr5 (54-96)||(19621613-19621655)
chr5 (227-297)||(42034857-42034927)
chr5 (224-297)||(22169555-22169628)
chr5 (224-297)||(33958918-33958991)
chr5 (223-271)||(7156178-7156226)
chr5 (230-290)||(36169351-36169410)
[»] chr4 (27 HSPs)
chr4 (152-290)||(9809024-9809162)
chr4 (124-297)||(16583539-16583712)
chr4 (127-290)||(17633337-17633500)
chr4 (140-290)||(9810710-9810860)
chr4 (149-289)||(55666844-55666982)
chr4 (124-259)||(1966826-1966961)
chr4 (149-300)||(8740809-8740960)
chr4 (131-289)||(33179759-33179917)
chr4 (131-297)||(19596723-19596891)
chr4 (149-290)||(35544438-35544578)
chr4 (131-244)||(33249616-33249729)
chr4 (133-289)||(42908520-42908675)
chr4 (140-259)||(2433693-2433811)
chr4 (150-289)||(24669123-24669274)
chr4 (124-297)||(14351007-14351178)
chr4 (223-297)||(24669270-24669344)
chr4 (193-259)||(20874814-20874880)
chr4 (227-289)||(1966780-1966841)
chr4 (224-297)||(14351160-14351233)
chr4 (211-249)||(1966978-1967016)
chr4 (224-297)||(42908666-42908738)
chr4 (246-290)||(17633287-17633331)
chr4 (248-300)||(19746939-19746991)
chr4 (248-300)||(19792815-19792867)
chr4 (230-281)||(9810866-9810918)
chr4 (226-289)||(19596882-19596946)
chr4 (254-294)||(25007625-25007665)
[»] scaffold1126 (2 HSPs)
scaffold1126 (124-297)||(202-375)
scaffold1126 (227-290)||(154-217)
[»] chr1 (31 HSPs)
chr1 (124-244)||(29677078-29677198)
chr1 (124-289)||(34490140-34490304)
chr1 (141-281)||(25238436-25238575)
chr1 (139-289)||(34364184-34364332)
chr1 (124-253)||(29167803-29167931)
chr1 (139-259)||(42604199-42604319)
chr1 (124-297)||(38951847-38952023)
chr1 (140-300)||(517421-517581)
chr1 (124-290)||(5831482-5831648)
chr1 (187-290)||(9929834-9929936)
chr1 (151-227)||(2996025-2996101)
chr1 (150-285)||(9468064-9468199)
chr1 (227-297)||(34490289-34490359)
chr1 (227-300)||(5831633-5831706)
chr1 (223-297)||(5855201-5855275)
chr1 (226-288)||(38244801-38244863)
chr1 (124-188)||(2569960-2570024)
chr1 (224-300)||(38952005-38952081)
chr1 (227-290)||(29167756-29167818)
chr1 (150-290)||(5855056-5855205)
chr1 (224-290)||(29677031-29677096)
chr1 (224-297)||(13350926-13350999)
chr1 (224-273)||(24708074-24708123)
chr1 (224-281)||(38245012-38245069)
chr1 (249-297)||(13351008-13351056)
chr1 (225-273)||(17227500-17227548)
chr1 (139-178)||(9929739-9929778)
chr1 (246-297)||(25238596-25238647)
chr1 (224-290)||(2569906-2569974)
chr1 (224-289)||(2570006-2570071)
chr1 (21-96)||(5855250-5855322)
[»] scaffold0123 (1 HSPs)
scaffold0123 (131-300)||(24021-24191)
[»] scaffold0251 (1 HSPs)
scaffold0251 (139-289)||(10623-10773)
[»] scaffold0126 (1 HSPs)
scaffold0126 (200-289)||(21549-21638)
[»] scaffold0043 (1 HSPs)
scaffold0043 (150-227)||(87035-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (150-227)||(112158-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (150-227)||(5870-5947)
[»] scaffold0213 (2 HSPs)
scaffold0213 (230-290)||(24738-24798)
scaffold0213 (225-288)||(24932-24995)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 64 - 294
Target Start/End: Original strand, 4169039 - 4169259
Alignment:
Q  64 tttgtactattctgaaaaatttcagttaaccaatatggtatgcatgacctcannnnnnncagttgcatgaccaccattttttcagaatttatttggttaa 163  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||       |||||||||||| || |||||||||||||||||||||||||    
T  4169039 tttgtactactctgaaaaatttcagttaaccaatatggtatgcgtgacctcatttttt-cagttgcatgactactattttttcagaatttatttggttaa 4169137  T
Q  164 ctaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaaga 263  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||         |||||| ||||| |||    
T  4169138 ctaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagtggtcacgc---------aatgtgatcacataga 4169228  T
Q  264 ccatatatttagttaactgaaatttttgaga 294  Q
    |||||||||||||||||||||||||| ||||    
T  4169229 ccatatatttagttaactgaaattttcgaga 4169259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 42637956 - 42638121
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42637956 tgaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 42638055  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||| ||||||    
T  42638056 ggtcacgcaactgaaaaaatgtggtcatatataccatatatttagttaactgaaattttcgagagt 42638121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 3823768 - 3823594
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt--cagctt 221  Q
    |||||| ||||||| |||||| || ||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||| ||||||  ||||||    
T  3823768 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagctt 3823670  T
Q  222 ctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
     ||||||||||||||||||| || |||||||||||||| |||||||||| || ||||||||||||||| |||||||    
T  3823669 ataaatagtggtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaactgaaattttcgagagtg 3823594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 3786078 - 3785905
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt-cagcttc 222  Q
    |||||| ||||||| |||||| || ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||||||     
T  3786078 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagctta 3785980  T
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||| ||| || |||||||||||||| |||||||| | || ||||||||||||||| |||||||    
T  3785979 taaatagtggtcacgtaacagaaaaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtg 3785905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 19280306 - 19280152
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | ||||||| ||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||    
T  19280306 tgaccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagt 19280208  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaat 286  Q
    ||||||||| |||| |||||||||||||  ||||||||||||| ||||||| ||||    
T  19280207 ggtcacgcatctgaaaaaatgtggtcactcagaccatatatttggttaactaaaat 19280152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 1705663 - 1705827
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    ||||| |||||||| | |||| ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  1705663 agttgtatgaccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttct 1705762  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||||||||   ||||| || ||||| | | ||| ||||| ||||||||||||||||    
T  1705763 aaatagtggtcacgcaact--aaaaatatgatcacacatatcatgtatttggttaactgaaattttt 1705827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 26308640 - 26308805
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | |||| |||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26308640 tgaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttctaaatagt 26308739  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||| |  || ||  ||||||||| |||| | |||||||||||  |||||||||| |||| |||||    
T  26308740 ggtcccagaattggaaaaatgtggccacacaaaccatatatttgattaactgaaaattttcagagt 26308805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 132 - 297
Target Start/End: Complemental strand, 44080364 - 44080199
Alignment:
Q  132 gaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtg 231  Q
    |||||| |||||| || ||||| ||||||||||||| || ||||||||||| ||||| ||||||||||  |||||||||||||||| |||||||||||||    
T  44080364 gaccactatttttccaaaatttttttggttaactaagtggaaaaatagtgggcacgcacattttagttt-gtgaccacatttttcaacttctaaatagtg 44080266  T
Q  232 gtcacgcaactg-ataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||| | ||||| |||||||| |||  |||||||| ||||||||||||| || ||||||    
T  44080265 gtcacgcaactgcaaaaaatatggtcacacagattatatatttggttaactgaaattgttcagagtg 44080199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 5341974 - 5341833
Alignment:
Q  142 ttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaac 241  Q
    |||||||||||||||||||||||||| || ||||||||||||||   | ||||||||||  ||||||||||||||| ||||||||||||||||||||| |    
T  5341974 ttttcagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaaatagtggtcacgcagc 5341875  T
Q  242 tgataaaatgtggtcacaaagaccatatatttagttaactga 283  Q
    | | ||||| |||||||| | |||||||||||| ||||||||    
T  5341874 taaaaaaatatggtcacacaaaccatatatttaattaactga 5341833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 297
Target Start/End: Original strand, 9710738 - 9710884
Alignment:
Q  145 tcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactga 244  Q
    ||||||||||||||||||||||| || |||||||||||||| | | |||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||    
T  9710738 tcagaatttatttggttaactaagtggaaaaatagtggtcaagtgtattt-agttgcgtgaccacagttttcagcttctaagtagtggtcacgcaaccga 9710836  T
Q  245 taaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
     ||||| ||||||     ||||||||||| |||||||||||||||| ||||||    
T  9710837 aaaaatatggtca-----accatatatttggttaactgaaatttttcagagtg 9710884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 22432446 - 22432315
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||||||||||| ||||||||| |||||||||||| |||||  || ||||||||||| ||| |||||||||||||  ||||||||||||||||||| |    
T  22432446 agttgcatgaccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagctttt 22432347  T
Q  224 aaatagtggtcacgcaactgataaaatgtggt 255  Q
    ||||||||| ||||||||||| ||||| ||||    
T  22432346 aaatagtggacacgcaactgaaaaaatatggt 22432315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 253
Target Start/End: Complemental strand, 31545725 - 31545603
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| |||||| |||||||||||| ||||||||| |  |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  31545725 tgaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaatagt 31545626  T
Q  231 ggtcacgcaactgataaaatgtg 253  Q
    ||| || ||||||| ||||||||    
T  31545625 ggttactcaactgaaaaaatgtg 31545603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 11509969 - 11509846
Alignment:
Q  174 aaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| |||||||||||||| | | |  ||||||    
T  11509969 aaataggggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggtcacacaaatcgcatattt 11509870  T
Q  274 agttaactgaaatttttgagagtg 297  Q
     ||||  |||||||||| ||||||    
T  11509869 ggttatttgaaatttttaagagtg 11509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 290
Target Start/End: Complemental strand, 19624414 - 19624256
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| |||||| |||||||||| ||||||||||| || |||||||||||||||| |||||||||||| ||| |||||| ||| ||||| |||||| |    
T  19624414 tgaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttataaata-t 19624316  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||| |||||||  |||| || ||||  |||| ||||||||  |||||||||||||||    
T  19624315 ggtcacacaactgaagaaatatgatcacttagactatatatttgattaactgaaattttt 19624256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 27707788 - 27707624
Alignment:
Q  125 gttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcta 224  Q
    |||||||| |||| |||||| ||||||||||||||||||  || ||||||||||||||||| || ||||||||||| | |||||||||||| || ||| |    
T  27707788 gttgcatgtccactatttttccagaatttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacattttttagtttcaa 27707689  T
Q  225 aatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||| |||||||| ||| ||| ||||||||| |||| | |||||||||||  |||| |||| |||||    
T  27707688 aat-gtggtcacacaattgaaaaaatgtgggcacacaaaccatatatttgattaattgaatttttt 27707624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 42481416 - 42481300
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||| ||||||||  ||||||||||||||||||||||||||||| |  ||||||| ||||||||  ||||||||||| ||||||| ||||||||| || |    
T  42481416 agttacatgaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagttttt 42481317  T
Q  224 aaatagtggtcacgcaa 240  Q
    |||||||||||||||||    
T  42481316 aaatagtggtcacgcaa 42481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27335402 - 27335479
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||||||| || |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaat 27335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 13358101 - 13358189
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaata 228  Q
    |||||||| ||||||||||||||||||  || |||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaata 13358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 23163400 - 23163271
Alignment:
Q  169 tgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgat--aaaatgtggtcacaaagacca 266  Q
    |||||||||| || ||||| |||||||||||| ||||||| |||||||||| |||| |||||||||| |||||||||  ||||||| |||||| ||||||    
T  23163400 tgaaaaaataatgatcacgtgcattttagttgtgtgaccatatttttcagc-tctacatagtggtcatgcaactgataaaaaatgtagtcacatagacca 23163302  T
Q  267 tatatttagttaactgaaatttttgagagtg 297  Q
    ||||||   |||||||| ||||| |||||||    
T  23163301 tatattagattaactgatattttcgagagtg 23163271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 27079314 - 27079453
Alignment:
Q  149 aatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagctt--ctaaatagtggtcacgcaactgata 246  Q
    |||||||||| |||||||| || ||||||  |||||||||||||||||| | |||||||||||||||    ||    |||| ||||||| |||||||| |    
T  27079314 aatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggtcatgcaactgaaa 27079410  T
Q  247 aaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    || |||||||||| ||||||||||||| |||||| ||||||||    
T  27079411 aattgtggtcacacagaccatatatttggttaaccgaaatttt 27079453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 27085111 - 27085250
Alignment:
Q  149 aatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagctt--ctaaatagtggtcacgcaactgata 246  Q
    |||||||||| |||||||| || ||||||  |||||||||||||||||| | |||||||||||||||    ||    |||| ||||||| |||||||| |    
T  27085111 aatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggtcatgcaactgaaa 27085207  T
Q  247 aaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    || |||||||||| ||||||||||||| |||||| ||||||||    
T  27085208 aattgtggtcacacagaccatatatttggttaaccgaaatttt 27085250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 289
Target Start/End: Original strand, 34627292 - 34627453
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt-cagcttc 222  Q
    |||||| |||| || |||||||  ||||||||||||||||||||||| ||||||| |||| ||  | ||||||||||||||||||||||||| | | ||     
T  34627292 agttgcgtgactactatttttttcgaatttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacatttttccgggttt 34627391  T
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||  |  |||||||| ||||||| |||||| ||| ||||    |||||||||||||||||    
T  34627392 taaatagtgtccttgcaactgaaaaaatgt-gtcacacagatcata----tagttaactgaaatttt 34627453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27365008 - 27365085
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||| ||| || ||||||||||||||| || ||||||| |||||||| ||||||||||| ||||||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacatttttcagtttctaaat 27365085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 31545714 - 31545799
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgatatgaaaagat 309  Q
    ||||||||||||| ||||| | |||||||||||||| ||||||||||||  |||| ||||||||||| |||||||||  |||||||    
T  31545714 aaatagtggtcacacaactaaaaaaatgtggtcacatagaccatatattaggttacctgaaatttttcagagtgatacaaaaagat 31545799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 41571904 - 41571797
Alignment:
Q  179 gtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagtta 278  Q
    |||||||||  |||||||  || |||| ||||||||||| ||| ||||||||||||||| |||||| |||||||||| ||| | |||||||||||  ||     
T  41571904 gtggtcacgtacattttaactgtgtgatcacatttttcaacttttaaatagtggtcacgtaactgaaaaaatgtggttacatataccatatatttgattg 41571805  T
Q  279 actgaaat 286  Q
    ||||||||    
T  41571804 actgaaat 41571797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 11501371 - 11501309
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgc 201  Q
    ||||||| | ||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  11501371 atttttttaaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagttgc 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27326047 - 27326124
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||| |||||| || || |||||||||||||||  | ||||||||||||||||||||||||| || ||||||||    
T  27326047 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27326124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 27332284 - 27332361
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||| |||||| || || |||||||||||||||  | ||||||||||||||||||||||||| || ||||||||    
T  27332284 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 39126263 - 39126189
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacattttt 215  Q
    |||||| | ||||||||||||||||||| || |||||||||| || ||||| |||||||||||| |||||||||||    
T  39126263 tttttttaaaatttatttggttaactaagtggaaaaatagtgatcgcgcgc-ttttagttgcgtaaccacattttt 39126189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 26308648 - 26308575
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||| ||||| | | |||||||||||| | ||||||||||||||||||||| |||||| | |||||||    
T  26308648 tagtggtcacacaactaaaacaatgtggtcacacaaaccatatatttagttaactgatatttttcaaagtgata 26308575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 34164375 - 34164326
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||||    
T  34164375 aaatagtggtcacgcaccttataaaatgtggtcacacagaccatatattt 34164326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 3786060 - 3786125
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | |||| ||||||||| |||| |||||||| |||||||| |||||||    
T  3786060 aaatagtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaattttt 3786125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 3823750 - 3823815
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | |||| ||||||||| |||| |||||||| |||||||| |||||||    
T  3823750 aaatagtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaattttt 3823815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 23163837 - 23163787
Alignment:
Q  159 gttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccac 209  Q
    ||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  23163837 gttaactaagtgaagaaatagtggtcacgtacattttagttgcgtgaccac 23163787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 27040683 - 27040745
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||||||||||| ||| |||| ||||| ||| ||||||||| |||||| ||||||||    
T  27040683 tagtggtcacgcaactgaaaaattgtgatcacacagatcatatatttggttaaccgaaatttt 27040745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 33488333 - 33488411
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgatat 301  Q
    |||||||||||| ||||||| | || ||| ||||| | | ||||||||||||||||||| |||||||| ||||| ||||    
T  33488333 taaatagtggtcgcgcaactaaaaatatgcggtcatacataccatatatttagttaacttaaatttttcagagttatat 33488411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 39126263 - 39126329
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||| ||||||||||| | ||||||| |||||| ||| ||||||||| ||||||| ||||||||    
T  39126263 aaatagtagtcacgcaactaaaaaaatgttgtcacacagatcatatatttggttaacttaaattttt 39126329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 18733572 - 18733638
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||| ||||||||||| | ||| |||||||||  | ||||||||||||||||||| ||||||||    
T  18733572 taaatagttgtcacgcaactaagaaa-tgtggtcacccataccatatatttagttaacttaaattttt 18733638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 5341996 - 5342046
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||||||||||| ||||||||||||   ||||||||||||||| |||||    
T  5341996 aaaatgtggtcacacagaccatatattcgattaactgaaatttttcagagt 5342046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 11510027 - 11509989
Alignment:
Q  147 agaatttatttggttaactaaatgaaaaaatagtggtca 185  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  11510027 agaatttatttagttaactaattgaaaaaatagtggtca 11509989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 22432428 - 22432494
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||| |||||| | ||||||| |||||| |||||||||||||  || ||| ||||||||    
T  22432428 aaatagtggtcatgcaactaaaaaaatgtagtcacacagaccatatatttgatttactcaaattttt 22432494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 3823869 - 3823797
Alignment:
Q  21 aagagcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    |||||||||||||||||| ||||||||||   |||| ||  | ||||||||| || |||||||| |||||||||||    
T  3823869 aagagcaatgataggtagacacccttaat---atgttcacccgtttgtactactcagaaaaattccagttaaccaa 3823797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 18733495 - 18733430
Alignment:
Q  224 aaatagtggtcacgcaactga-taaaatgtggtcacaaagaccatatatttagttaactgaaattt 288  Q
    ||||||| |||||||||| || ||||||||||| ||| | ||||||||||| ||||| ||||||||    
T  18733495 aaatagtagtcacgcaaccgaataaaatgtggtaacacaaaccatatatttggttaattgaaattt 18733430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 11501310 - 11501251
Alignment:
Q  237 gcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||| |||||||||||||| ||||||||||||| ||||  ||||| |||| ||||||    
T  11501310 gcaactga-aaaatgtggtcacacagaccatatatttggttatttgaaaattttcagagtg 11501251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 126 - 297
Target Start/End: Complemental strand, 43900642 - 43900471
Alignment:
Q  126 ttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaa 225  Q
    |||| ||||| | |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43900642 ttgcgtgacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 43900543  T
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||||||||||| |||||||||| |||||||    
T  43900542 atagtggtcacacaactgaaaaaatgtgatcacacagaccatatatttagttacctgaaattttcgagagtg 43900471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 1400667 - 1400901
Alignment:
Q  23 gagcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa---tatggtatgcatgacctcannnn 119  Q
    ||||||| |||||||| |||||||||||   ||||||  | ||||||| | |||||||||||||||||||||||   |||||||||  ||||| ||        
T  1400667 gagcaataataggtagacacccttaatg---tgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacatttt 1400763  T
Q  120 nnncagttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagc 219  Q
        |||||| ||||||| |||||| || ||||||||||||||||||| || |||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  1400764 tta-agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagc 1400862  T
Q  220 ttctaaatagtggtcacgcaactgataaaatgtggtcaca 259  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  1400863 ttctaaatagtggtcacgcaactga-aaaatgtggtcaca 1400901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 30906051 - 30906217
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| || ||| || |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  30906051 tgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcatttaaatagt 30906150  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||| |||||| |||  ||||||||  ||||||||||||| |||||||||||||||| ||||||    
T  30906151 ggtcacgaaactgaaaaatggtggtcacgcagaccatatatttggttaactgaaatttttcagagtg 30906217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 297
Target Start/End: Complemental strand, 45306067 - 45305910
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    ||||||| |||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  45306067 atttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacgc 45305969  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||| ||||| |||||| | |||| ||||||||  ||||||||||||||| ||||||    
T  45305968 aactgaaaaaatatggtcatacagactatatatttgattaactgaaattttttagagtg 45305910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 28527316 - 28527445
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||| |||||||||||||||||||||| || ||||||||||||||| ||||| |||||| |||||| ||||||| ||||||||    
T  28527316 agttgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattttccagcttct 28527414  T
Q  224 aaatagtggtcacgcaactgataaaatgtgg 254  Q
    ||||  ||||||||||||| | |||||||||    
T  28527415 aaattatggtcacgcaactaaaaaaatgtgg 28527445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 33667506 - 33667328
Alignment:
Q  51 atatgtacattcatttgtactattctgaaaaatttcagttaaccaa---tatggtatgcatgacctcannnnnnncagttgcatgaccaccattttttca 147  Q
    ||||||||| || ||||||| | |||||||||||| ||||||||||   ||||||||| |||| | ||        |||||| ||||||| |||||||||    
T  33667506 atatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacatttttta-agttgcgtgaccactattttttca 33667408  T
Q  148 gaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||| ||||||||||||||| || |||||||||||| |||| ||||||| |||||||||||||||||||| |||||||||    
T  33667407 gaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaat 33667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 7378463 - 7378626
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| |||| || ||||||| | |||||| | |||||| ||| || || |||||||||||| | |||||||||||||| |||| |||||| |||||||    
T  7378463 agttgcgtgactactatttttttaaaatttaat-ggttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattttt-agcttct 7378560  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||| ||||| |||||||||| ||||| |||||||| | ||||||||||| ||||||||||||||||    
T  7378561 aaat-gtggttacgcaactgaaaaaatatggtcacacaaaccatatattttgttaactgaaattttt 7378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 1400785 - 1400719
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | |||||||||||||| | ||||||||||| ||||||||||||||||    
T  1400785 aaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaattttt 1400719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 28527334 - 28527268
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||||| |||| |||||||||||    
T  28527334 aaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaattttt 28527268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 33667413 - 33667486
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | |||||||| ||| | | ||||||||||| ||||||| |||||||| ||||||    
T  33667413 aaatagtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtg 33667486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 41212426 - 41212477
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||| ||||||    
T  41212426 aaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtg 41212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 34175209 - 34175155
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtg 204  Q
    |||||||||||||||||| || ||||||||  ||||| | |||||||||||||||    
T  34175209 atttatttggttaactaagtggaaaaatagcagtcacacacattttagttgcgtg 34175155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 140 - 289
Target Start/End: Original strand, 33815025 - 33815174
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 239  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815025 ttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 33815124  T
Q  240 actgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||| |||||||||||||| |||| |||||||||||||| |||| ||||    
T  33815125 actgaaaaaatgtggtcacacagactatatatttagttaattgaagtttt 33815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 10304695 - 10304865
Alignment:
Q  126 ttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaa 225  Q
    |||| |||||||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  10304695 ttgcgtgaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaa 10304794  T
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| ||||||    
T  10304795 atagtgatcacgcaactgaaaaaatgtggtcacacagaccatatatttagttcactaaaattttcgagagt 10304865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 22608476 - 22608304
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | |||||||||| ||||||| |||||||| | ||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  22608476 agttgcgtgaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttct 22608377  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||| |||||||||||||||    
T  22608376 aaatagtggtcacgcaactga-aaaatgtagtcacacagaccatatatttggttaactaaaatttttgagagtg 22608304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 3222530 - 3222375
Alignment:
Q  141 tttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 240  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  3222530 ttttccagaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaa 3222431  T
Q  241 ctgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||| |||||||||||||| | ||||||||||| ||||  |||||||||| |||||    
T  3222430 ctgaaaaaatgtggtcacagacaccatatatttggttatttgaaatttttaagagt 3222375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 138708 - 138820
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  138708 agttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttct 138807  T
Q  224 aaatagtggtcac 236  Q
    |||||||||||||    
T  138808 aaatagtggtcac 138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 146729 - 146841
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  146729 agttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttct 146828  T
Q  224 aaatagtggtcac 236  Q
    |||||||||||||    
T  146829 aaatagtggtcac 146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 23595253 - 23595094
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | ||||||||||||||||| ||||||||| || ||||||||||| ||||||        |||  ||||||||||||||||||||||||||||    
T  23595253 tgaccactaatttttcagaatttattttgttaactaagtggaaaaatagtggccacgcg--------ttg--tgaccacatttttcagcttctaaatagt 23595164  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
     ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  23595163 tgtcacacaactaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgata 23595094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 289
Target Start/End: Original strand, 3620761 - 3620917
Alignment:
Q  132 gaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtg 231  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||| |||| ||||||||||| |||||||||||||    
T  3620761 gaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaatagtg 3620860  T
Q  232 gtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
     |||||| | ||| ||| |||  || || |||||| ||||||  ||||||||||||||    
T  3620861 atcacgcgattga-aaattgtattcgcacagaccacatatttgattaactgaaatttt 3620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 9474718 - 9474585
Alignment:
Q  151 tttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaat 250  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||       ||||||||||||| |||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattttttagcttcta-------gtcacgcaactgaaaaaat 9474627  T
Q  251 gtg--gtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||  |||| | ||| |||||| |||| ||||||||||||||    
T  9474626 gtggtgtcatatagatcatatagttagctaactgaaattttt 9474585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 9068521 - 9068411
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||| ||||| ||||||| ||| |||| || |||||||||  ||||||||||||||| || |||||||||||||||||||| |    
T  9068521 agttgcgtgaccactatttttccagaacttatttgttta-ctaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacatttttcagctttt 9068423  T
Q  224 aaatagtggtca 235  Q
    ||||||||||||    
T  9068422 aaatagtggtca 9068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 2430600 - 2430664
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgc 188  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  2430600 agttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgc 2430664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 2835069 - 2834974
Alignment:
Q  133 accaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaata 228  Q
    ||||| |||||| || ||||||||| |||| |||| || ||||||| |||||||||| ||||||||||| |||||| |||||||||||| ||||||    
T  2835069 accactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagcttttaaata 2834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 11108147 - 11108235
Alignment:
Q  202 gtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||||||||| |  | ||||||||||||||||| |||||||||||||| | | ||||||||| ||||| |||| |||||    
T  11108147 gtgaccacatttttcagcttattgacagtggtcacgcaactgaaaaaatgtggtcacacaaatcatatatttggttaattgaatttttt 11108235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 138726 - 138653
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | ||||||||| |||| ||||||||||||| ||||||| || ||||| ||||||    
T  138726 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtg 138653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 146747 - 146674
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | ||||||||| |||| ||||||||||||| ||||||| || ||||| ||||||    
T  146747 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtg 146674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 9068503 - 9068576
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | |||||||||||||| | |||||||||||  |||||| |||||||| ||||||    
T  9068503 aaatagtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtg 9068576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 30056138 - 30056065
Alignment:
Q  224 aaatagtggtcacgcaactgataaaa-tgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    ||||||||||||||||||  | |||| |||||||||| ||||||||||||| |||||||||||||||| |||||    
T  30056138 aaatagtggtcacgcaacaaaaaaaaatgtggtcacatagaccatatatttggttaactgaaattttttagagt 30056065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 2430650 - 2430706
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaac 280  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||    
T  2430650 aaatagtggtcacgcaactgaaaaaatgtggtcacacaaaccatatatttggttaac 2430706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 10304707 - 10304639
Alignment:
Q  228 agtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||| | | ||| |||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  10304707 agtggtcacgcaattaa-aaagtgtggtcacacagaccatatatttggttaactgaaattttttagagtg 10304639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 7915696 - 7915764
Alignment:
Q  229 gtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||| | ||| |||||||||| |||| ||||||||  ||||||||||||||| ||||||    
T  7915696 gtggtcacgcaactaaaaaattgtggtcacacagacgatatatttgattaactgaaatttttcagagtg 7915764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 2365649 - 2365704
Alignment:
Q  230 tggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaa 285  Q
    ||||||||||||||| |||||||||||||  | ||||||||||| |||||||||||    
T  2365649 tggtcacgcaactgaaaaaatgtggtcacgcataccatatatttggttaactgaaa 2365704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 2430618 - 2430553
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||| |||||| | ||||  |||||||| ||| ||||||||||||||||||||||||||    
T  2430618 aaatagtggtcatgcaactaaaaaaaa-tggtcacacagatcatatatttagttaactgaaattttt 2430553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 11108159 - 11108109
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||| |||||    
T  11108159 aaaatgtggtcacacagaccatatatttggttaattgaaatttttcagagt 11108109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 7706935 - 7706996
Alignment:
Q  229 gtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||| ||||||| | ||||||| || ||| |||| |||||||||||||||||||||||||    
T  7706935 gtggtctcgcaactaaaaaaatgtagttacacagactatatatttagttaactgaaattttt 7706996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 2430498 - 2430568
Alignment:
Q  21 aagagcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctg-aaaaatttcagttaac 93  Q
    ||||| || ||||||||| |||||||||||   ||||||||| ||||||| |||||| ||||||||||||||||    
T  2430498 aagagtaacgataggtagacacccttaatg---tgtacattcctttgtaccattctgaaaaaatttcagttaac 2430568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 7706876 - 7706809
Alignment:
Q  224 aaatagtggtcacgcaactg-ataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||||||||| | |||||||||||||| | ||||||||||   |||||| ||||||||    
T  7706876 aaatagtggtcacgcaactgaaaaaaatgtggtcacacaaaccatatattatattaactaaaattttt 7706809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 11108067 - 11108133
Alignment:
Q  27 aatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    |||| ||||||| ||| |||||||   |||||||||| |||||||| |||||||||||||| ||||||||    
T  11108067 aatggtaggtagacactcttaatg---tgtacattcacttgtactactctgaaaaatttcaattaaccaa 11108133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 14524142 - 14524091
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttag 275  Q
    |||||||||||||||| || | | |||||||||||| |||||||||||||||    
T  14524142 aaatagtggtcacgcaccttaaacaatgtggtcacacagaccatatatttag 14524091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 24386312 - 24386375
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||| |||||||||  | || ||||||||||| ||||||||||||| ||||||| ||||||||    
T  24386312 tagtgatcacgcaacaaaaaatatgtggtcacacagaccatatatttggttaacttaaattttt 24386375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 2835181 - 2835108
Alignment:
Q  20 aaagagcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    ||||||||||||||||||| || ||||||||   |||| ||  |||||||| | |||||||||||| ||||||||||    
T  2835181 aaagagcaatgataggtagacagccttaatg---tgtatatcaatttgtaccactctgaaaaatttaagttaaccaa 2835108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 3222532 - 3222606
Alignment:
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||| ||||   |||||||||||||| |||||||||||||  |||||| |  ||||| |||||||||    
T  3222532 atagtggtcacgtaactagaaaaatgtggtcacacagaccatatatttgattaactaatcttttttagagtgata 3222606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 23595261 - 23595311
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||||||||||| |||| |||||||| ||||| |||||||||| |||||    
T  23595261 aaaatgtggtcacacagactatatatttggttaattgaaattttttagagt 23595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 2835060 - 2835133
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||| || ||||| | |||||||||||||| |||   ||||||| ||||||| |||||||| ||||||    
T  2835060 aaatagtggttacacaactaaaaaaatgtggtcacacagatggtatatttggttaacttaaatttttcagagtg 2835133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 15341435 - 15341484
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||||||||||||| || | |||||||| ||||| |||||||||||||    
T  15341435 aaatagtggtcacgcatcttaaaaaatgtgttcacacagaccatatattt 15341484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 15341858 - 15341907
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    ||||||||||||| || || | |||||||||||||| |||||||||||||    
T  15341858 aaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatattt 15341907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 20084735 - 20084678
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgc 188  Q
    ||||||| ||| |||  |||||||||||||||||||| ||||||| ||||| ||||||    
T  20084735 tgaccactattatttttgaatttatttggttaactaagtgaaaaagtagtgatcacgc 20084678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 7706926 - 7706862
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgc 188  Q
    |||||| |||| || |||||| ||||| |||||||||||  ||| || |||||||||||||||||    
T  7706926 agttgcgtgacaactatttttccagaacttatttggttacttaagtggaaaaatagtggtcacgc 7706862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 9068395 - 9068336
Alignment:
Q  237 gcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||| |||||||||||| | |||||||||| || ||||||||| ||||| |||||||    
T  9068395 gcaactga-aaaatgtggtcatacagaccatatacttggttaactgatattttcgagagtg 9068336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 24386283 - 24386323
Alignment:
Q  148 gaatttatttggttaactaaatgaaaaaatagtggtcacgc 188  Q
    |||||||||||||||||||| ||||||| ||||| ||||||    
T  24386283 gaatttatttggttaactaagtgaaaaagtagtgatcacgc 24386323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 5321955 - 5322131
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5321955 agttgcgtgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttct 5322054  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||||| || |||||||| ||| |||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  5322055 aaataatgatcacgcaattgaaaaaatgtgatcacacagaccatatatttggttaattgaaatttttgagagtgata 5322131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 131 - 296
Target Start/End: Original strand, 38606828 - 38606993
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| || ||| |||||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  38606828 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagt 38606927  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    ||| |||||||||| |||||||||||||  | ||||||||| ||||||||||||||||| ||||||    
T  38606928 ggtaacgcaactgaaaaaatgtggtcacgcaaaccatatatgtagttaactgaaattttggagagt 38606993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 29367076 - 29367224
Alignment:
Q  152 ttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatg 251  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||     
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaata 29367175  T
Q  252 tggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||| ||| ||||||||||||||||||| | |||||||  |||||||||    
T  29367176 tggttacatagaccatatatttagttaattaaaattttcaagagtgata 29367224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 31273555 - 31273728
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||| ||||||||||| ||||||||||||||||||| | ||||||||||| | ||||| ||||||||| ||| |||||| ||||||||||||||    
T  31273555 agttgcgtgatcaccattttttaagaatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttct 31273654  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||| |||||||||||||| || |||||| |||| |||||||||||||  |||| ||||||||| |||||||    
T  31273655 aaataggggtcacgcaactgaaaacatgtggccacatagaccatatatttgattaattgaaattttcgagagtg 31273728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 5573879 - 5573720
Alignment:
Q  141 tttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 240  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||    
T  5573879 tttttcaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagtggtcacgcaa 5573780  T
Q  241 ctgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
     ||| ||||||| |||||| | | ||||||||| |||||||||||| || |||| |||||    
T  5573779 ttgaaaaaatgtagtcacatatatcatatatttggttaactgaaatgttcgagaatgata 5573720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 15714688 - 15714847
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| ||||||||  ||||||||||||||||||| || ||||||||||||||||  |||||||||| |||||||| |||||||||||| |    
T  15714688 agttgcgtgaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagctttt 15714787  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactga 283  Q
    ||||||| ||||| || |||| |||||||||| ||| |||||||||||||||||||||||    
T  15714788 aaatagtagtcacacagctgaaaaaatgtggttacacagaccatatatttagttaactga 15714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 1251470 - 1251642
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||| || ||||||||||||||||||| ||  |||||||||||| ||| |||||||||| | ||| |||||||||||| || |    
T  1251470 agttgcgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt-catgatcacatttttcaggtttt 1251568  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||||| ||||||||||| || | | ||||||||||||||||||||||||| |||||||    
T  1251569 aaatagtggtcacgcaactgaaaaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtg 1251642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 141 - 290
Target Start/End: Original strand, 26493347 - 26493493
Alignment:
Q  141 tttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 240  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||    
T  26493347 tttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgcattt-agttgcgtgaccacatttttcagcttctaaatagtagttacacaa 26493445  T
Q  241 ctgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||| |||||||| ||||| | |  |||||||| ||||| ||||||||||    
T  26493446 ctgaaaaaatgtgatcacacaaa--atatatttggttaattgaaattttt 26493493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 1240901 - 1241041
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| |||||| || ||||||||||||||||||| ||  |||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  1240901 tgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagcttctaaatagt 1240999  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatt 272  Q
    |||||| ||||||| ||||| ||||| || | ||||||||||    
T  1241000 ggtcacacaactgaaaaaatatggtctcacacaccatatatt 1241041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 140 - 290
Target Start/End: Complemental strand, 31596894 - 31596745
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 239  Q
    ||||| || ||||||||||||||| ||| || |||||||||| | || ||||||| |||||  ||||||||||||||| ||||||||||||||| |||||    
T  31596894 tttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttctaaatagtggtaacgca 31596796  T
Q  240 actgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||| |||||||||||||| | |||||||||||  ||||||| |||||||    
T  31596795 actgaaaaaatgtggtcacacataccatatatttgattaactgtaattttt 31596745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 33286263 - 33286178
Alignment:
Q  194 ttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaa 279  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||| |||||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggtcacgcagaccatatatttggttaa 33286178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 15233318 - 15233168
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct-----------aaatagtggtcacgc 238  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |           ||||||||||||||     
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaatgctggaaaaatagtggtcacgt 15233219  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||| |||||||| || || |||||||||||||  |||||||||||||||    
T  15233218 aactga-aaaatgtgatcgcagagaccatatatttgattaactgaaattttt 15233168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 32959635 - 32959541
Alignment:
Q  165 taaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcaca 259  Q
    |||||| ||||||||||||||| | ||||||||||| ||||||| |||||| ||||||| ||| ||||||||| || ||| |||||||| |||||    
T  32959635 taaatggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaatgtgatcaca 32959541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 15714706 - 15714633
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | |||||||||||||| | | ||||||||||| |||||||||||||| ||||||    
T  15714706 aaatagtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtg 15714633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 38606837 - 38606766
Alignment:
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||| || | ||||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  38606837 atagtggtcacgcagctaaaaaaatatggtcacacataccatatatttagttaactgaaatttttcagagtg 38606766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 5573877 - 5573951
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagac-catatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||| | | |||||||||||||||||||  ||||||||||||||||||||| ||| ||||||    
T  5573877 aaatagtggtcacgcaattaaaaaaatgtggtcacaaagacatatatatttagttaactgaaatcttttagagtg 5573951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 24575907 - 24576023
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||  ||         | |||  ||||||||||||||||||||||||    
T  24575907 tgaccactatttttccagaatttatttggttaaataagtgaaaaaatagtggtcacttgc---------gtgtggtcacatttttcagcttctaaatagt 24575997  T
Q  231 ggtcacgcaactgataaaatgtggtc 256  Q
    ||| ||| |||| | |||||||||||    
T  24575998 ggtaacgaaactcaaaaaatgtggtc 24576023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 6809895 - 6809804
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtg 231  Q
    |||| ||| ||||||||||||||| |||||| |||||||||||||||  | |||||||| | || ||||||||||| | ||| |||||||||    
T  6809895 ttttctcataatttatttggttaattaaatggaaaaatagtggtcacatgtattttagtcgagtaaccacattttttatcttttaaatagtg 6809804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 5321973 - 5321907
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | |||||||||||||| |  ||||||||||| |||||| ||| ||||    
T  5321973 aaatagtggtcacgcaactaaaaaaatgtggtcacacatgccatatatttaattaactcaaaatttt 5321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 40502175 - 40502224
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||||||||||||| || | |||||||||||||| |||||||||||||    
T  40502175 aaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 40502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 24919659 - 24919710
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttag 275  Q
    |||||||||||||||| || | |||||||||||||| ||| |||||||||||    
T  24919659 aaatagtggtcacgcaccttaaaaaatgtggtcacagagaacatatatttag 24919710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 24576180 - 24576226
Alignment:
Q  251 gtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||| ||||||||||||| ||||| ||||||||| |||||||    
T  24576180 gtggtcacacagaccatatatttggttaattgaaattttcgagagtg 24576226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 24919871 - 24919925
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagtta 278  Q
    |||||||||||||||| || | |||||||||||||| ||| ||||||||| ||||    
T  24919871 aaatagtggtcacgcaccttaaaaaatgtggtcacacagaacatatatttggtta 24919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 28700133 - 28700080
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||||| |||||||| | |||||||||||||||||||||||||||| ||| |||||    
T  28700133 aaaatatggtcacata-accatatatttagttaactgaaattttttagaatgata 28700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 24537982 - 24538078
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaata 228  Q
    ||||||| | |||| || |||||||||||||||| | ||| |||||||||||| || ||| ||  |||| | |||||| |||||| ||||||||||||    
T  24537982 tgaccactaattttccaaaatttatttggttaaccatatggaaaaatagtggtaacacgcgttgcagttacatgaccatattttt-agcttctaaata 24538078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 40502387 - 40502436
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    ||||||||||||| || || | |||||||||||||| |||||||||||||    
T  40502387 aaatagtggtcacacaccttaaaaaatgtggtcacacagaccatatattt 40502436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 26914702 - 26914631
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    |||||||||||||| |||| | |||||||| ||||| | | |||||||||||||| || |||||||| |||||    
T  26914702 aaatagtggtcacgtaactaa-aaaatgtgatcacacaaatcatatatttagttagcttaaatttttcagagt 26914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 140 - 296
Target Start/End: Complemental strand, 20556866 - 20556710
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 239  Q
    |||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcacaca 20556767  T
Q  240 actgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagt 296  Q
    ||||| ||||| ||||||||  |||||||||||| ||||||||||||||| ||||||    
T  20556766 actgaaaaaatatggtcacaccgaccatatatttggttaactgaaattttcgagagt 20556710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 124 - 300
Target Start/End: Complemental strand, 31303569 - 31303393
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| || ||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  31303569 agttgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttct 31303470  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||| ||||| ||| |||||||||||| |||||||||    
T  31303469 aaatagtggtcacgcaattgaaaaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgata 31303393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 279
Target Start/End: Complemental strand, 4290942 - 4290788
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||| || || |||||||||||||||||||||| |||||    
T  4290942 agttgcgtgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacactt-agttgcgtgaccacatttttcaacttct 4290844  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaa 279  Q
    ||||||||||||| ||||||| |||||||||||| | | ||||||||| |||||||    
T  4290843 aaatagtggtcactcaactgaaaaaatgtggtcagataaaccatatatctagttaa 4290788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 18312942 - 18312770
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| ||||||  |||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||| |||| ||||||||||||    
T  18312942 agttgcgtgaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcaca-ttttcagcttct 18312844  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||| || |||||||||| || ||||||||||| |||||||||||||  |||| ||||||||| |||||||    
T  18312843 aaatagtagtgacgcaactgaaaatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtg 18312770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 21589739 - 21589590
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||||||||||| |||||| ||||| ||||||| |||| ||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  21589739 agttgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttcagcttct 21589640  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||||| |||| ||||||| ||||| |||||||| |||| ||||||||    
T  21589639 aaatagtgatcacacaactgaaaaaatatggtcacatagacaatatattt 21589590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 124 - 289
Target Start/End: Complemental strand, 21548568 - 21548404
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||| |||||||||||||||||||||| || ||||| |||||| |||||||||  |||||||||||||||||||||||||| |    
T  21548568 agttgcgtgaccactatttttccagaatttatttggttaactaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccacatttttcagctttt 21548469  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||| ||||||| ||||||| ||||| |||||||| | ||||||| |||  ||||||||||||||    
T  21548468 aaatattggtcacacaactgaaaaaatatggtcacacataccatat-tttgattaactgaaatttt 21548404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 15958313 - 15958472
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaata----gtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaa 226  Q
    ||||||| ||||||||||||||||||||||||| ||| | |||||| |    ||| |||||| ||||| | |||||||||||||||||||||||||||||    
T  15958313 tgaccactattttttcagaatttatttggttaaataagtaaaaaaaaaaattgtgatcacgcacatttaa-ttgcgtgaccacatttttcagcttctaaa 15958411  T
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||| ||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  15958412 tagtg-tcatgcaactta-aaaatgtggtcacacagaccatatatttagttaactgaaatttt 15958472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 289
Target Start/End: Original strand, 22740654 - 22740817
Alignment:
Q  126 ttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaa 225  Q
    |||| |||| || ||||||||||||||||||||||||||||| || ||||||| || ||||||  |||||||||||||||||| |||||||||||| |||    
T  22740654 ttgcgtgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttcagcttttaa 22740753  T
Q  226 atagtggtcacgcaactg-ataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||| ||||||| |||||| | |||||||||| ||| | || |||||||||||||| |||||||||    
T  22740754 ata-tggtcacacaactgaaaaaaatgtggttacacaaactatatatttagttaattgaaatttt 22740817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 5083792 - 5083954
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| ||||||  ||||||||||| |||||| || |  ||||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||||    
T  5083792 tgaccactatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgcattt-agttgcgtgaccatatttttcaacttctaaatagt 5083890  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgaga 294  Q
    |||||||||| ||| |||||||||||||| | |||||||||||  | || ||||||||| ||||    
T  5083891 ggtcacgcaattgaaaaaatgtggtcacacataccatatatttgatgaattgaaattttcgaga 5083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 28804990 - 28805094
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| || ||| || ||||||||||||||||||| || ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  28804990 tgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttcagcttctaaatagt 28805088  T
Q  231 ggtcac 236  Q
    | ||||    
T  28805089 gatcac 28805094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 46943761 - 46943839
Alignment:
Q  150 atttatttggttaactaaatgaaaa--aatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46943761 atttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcaca-ttttcagcttctaaat 46943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 297
Target Start/End: Complemental strand, 32964852 - 32964696
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct----------aaatagtggtcacgca 239  Q
    ||||||| |||||| ||| || |||||||||||||||| ||||||||||| | |||||| ||||||||||||||          ||||||||||||| ||    
T  32964852 atttattaggttaattaagtggaaaaatagtggtcacgtgcattttagttacatgaccatatttttcagcttctaaatgctggaaaatagtggtcacaca 32964753  T
Q  240 actgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    | ||| ||||| |||||||| | ||||||||||||||||||| ||||| || ||||||    
T  32964752 attga-aaaatatggtcacacataccatatatttagttaacttaaattctttagagtg 32964696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 32964848 - 32964925
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||||| ||||||||| |||||||| |||||||||    
T  32964848 taaatagtggtcacgcaactaaaaatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgata 32964925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 5083803 - 5083727
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgatat 301  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||    
T  5083803 aaatagtggtcacgtaactaa-aaaatgtggtcacaaagaccatatatttgattaactgaaatttttcaaagtgatat 5083727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 21589721 - 21589794
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||| |||||| | |||||||||||||| ||||||||||||| | |||||||||||||| ||||||    
T  21589721 aaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactgaaattttttagagtg 21589794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 28805116 - 28805192
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||| ||| |||||||||||| |||||||||||||| | ||||||||||| ||||||| |||||||| |||||||||    
T  28805116 aaatcgtgatcacgcaactgaaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgata 28805192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 21548550 - 21548616
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| |  |||| || ||||| ||||||||||||||||||||||||||||||    
T  21548550 aaatagtggtcacgcaactaaacaaatatgatcacacagaccatatatttagttaactgaaattttt 21548616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 22033158 - 22033224
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||| ||||||||    
T  22033158 aaatagtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaactaaaattttt 22033224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 5174975 - 5174910
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcatttta 196  Q
    ||||||| | |||||||||||||||||| |||||||| || ||||||||||||||||| |||||||    
T  5174975 tgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 15958324 - 15958247
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgatat 301  Q
    ||||||||||||| ||||| | ||||||||||||||  |||||||||||| ||||||| |||||||| | ||||||||    
T  15958324 aaatagtggtcacacaactaaaaaaatgtggtcacactgaccatatatttggttaacttaaatttttcaaagtgatat 15958247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 31303553 - 31303616
Alignment:
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||||| ||||||||||||||||    
T  31303553 atagtggtcacgcaactaa-aaaatgtggtcacacataccatatattttgttaactgaaattttt 31303616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 27523496 - 27523583
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||||||||||||| ||| || ||||||||| |||| || ||||||| |||  ||||||  |||||||| ||||||||    
T  27523496 ttttttcagaatttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgtatgaccatgtttttcagtttctaaat 27523583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 2887188 - 2887230
Alignment:
Q  192 ttttagttgcgtgaccacatttttcagcttctaaatagtggtc 234  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2887188 ttttagttgcgtaaccacatttttcagcttctaaatagtggtc 2887230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 20556867 - 20556943
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||||||||||||| ||||  | |||||||||||| | |||| |||||||||||||||||||| |||| | |||||||    
T  20556867 aaatagtggtcactcaaccaaaaaaatgtggtcaaacagactatatatttagttaactgaaaattttcaaagtgata 20556943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 28804976 - 28804933
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  28804976 aaaatgtggtcacatagaccatatatttggttaactgaaatttt 28804933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 18312924 - 18312997
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | ||||| | | |||| | ||||||||||| |||| ||||||||||| ||||||    
T  18312924 aaatagtggtcacgcaactaaaaaaatttagccacacaaaccatatatttggttagctgaaatttttcagagtg 18312997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 4290927 - 4290990
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||||| | |||| ||||||| | ||| ||| ||||| ||||||||||||||||    
T  4290927 tagtggtcacgcaactaaaaaaacgtggtcatacagatcatttatttggttaactgaaattttt 4290990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 22740150 - 22740096
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||||| |||||||||||||  |||||| |||| ||| |||||||||    
T  22740150 aaaatgtggtcacacagaccatatatttgattaacttaaatatttcagagtgata 22740096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 28804882 - 28804950
Alignment:
Q  25 gcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    |||||||||||||| ||||||||||   |||||||  | ||||||| |||||  ||||||||||||||||||    
T  28804882 gcaatgataggtagacacccttaat---atgtacacccttttgtaccattctagaaaatttcagttaaccaa 28804950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 22033095 - 22033151
Alignment:
Q  171 aaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||| ||| ||||||||||| ||| ||  ||||||||| ||||||||    
T  22033095 aaaaaatagtggtcccgcacattttagttgtgtgcccgtatttttcagtttctaaat 22033151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 35922848 - 35922718
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  35922848 agttgcatgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttct 35922749  T
Q  224 aaatagtggtcacgcaactgataaaatgtgg 254  Q
    ||||||||||||||||||||| |||||||||    
T  35922748 aaatagtggtcacgcaactgaaaaaatgtgg 35922718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 124 - 289
Target Start/End: Complemental strand, 22169573 - 22169408
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||  ||||||||| ||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  22169573 agttgcgtgaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttat 22169474  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||||||||||||||||||| |||||||| ||||| |  ||||||||||||||||||||||||||    
T  22169473 aaatagtggtcacgcaactgaaaaaatgtgatcacatattccatatatttagttaactgaaatttt 22169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 289
Target Start/End: Complemental strand, 13312714 - 13312550
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||| || ||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13312714 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttct 13312615  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||| |||||| ||||||| |||||||| ||||| ||||||||||||| ||||| |||||||||    
T  13312614 aaatagcggtcacccaactga-aaaatgtgttcacatagaccatatatttggttaattgaaatttt 13312550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 38521984 - 38522115
Alignment:
Q  147 agaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgata 246  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  38521984 agaatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttctaaatagtggtcatgcaattgaaa 38522082  T
Q  247 aaatgtggtcacaaagaccatatatttagttaa 279  Q
    ||||||||||||| ||||||||||||| |||||    
T  38522083 aaatgtggtcacatagaccatatatttggttaa 38522115  T

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Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 43461709 - 43461858
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| ||| | |||||||||||||||||  |||||||| |||||||||||||||||| |    
T  43461709 attttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttctaaatagtggtcacac 43461808  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||| ||||| ||||| ||||||||||||||||  ||||||||||||||    
T  43461809 aactgaaaaaatatggtc-caaagaccatatatttgattaactgaaatttt 43461858  T

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Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 127 - 294
Target Start/End: Original strand, 33958976 - 33959142
Alignment:
Q  127 tgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaa 226  Q
    ||||||||||| |||||| ||||||||||||||| |||||| || |||||||||||| || || |||||||||||||||||| ||||||||| |||||||    
T  33958976 tgcatgaccacaatttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaa 33959075  T
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgaga 294  Q
    ||||||||||||| |||| |||||||  ||||| |||  |||||||| |||||||||| |||| ||||    
T  33959076 tagtggtcacgcagctgaaaaaatgtaatcacataga-tatatattttgttaactgaagttttcgaga 33959142  T

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Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 42034872 - 42034739
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | |||| || ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42034872 agttgcgtgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttct 42034773  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcaca 259  Q
     |||||  ||||||||||||| ||||||||||||||    
T  42034772 -aataggagtcacgcaactga-aaaatgtggtcaca 42034739  T

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Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 19621481 - 19621631
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct----aaatagtggtc 234  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||     ||||    |||||||||||    
T  19621481 atttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgtttt-----ttctggaaaaatagtggtc 19621575  T
Q  235 acgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||| ||  |||||||||||||| | ||||||||||| ||||||||||||||||    
T  19621576 acgcaaatggaaaaatgtggtcacacataccatatatttggttaactgaaattttt 19621631  T

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Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 36169394 - 36169499
Alignment:
Q  192 ttttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttg 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||  | | ||||||||||||    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggtcacacataccatatatttgatcagctgaaatttttg 36169493  T
Q  292 agagtg 297  Q
    ||||||    
T  36169494 agagtg 36169499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 297
Target Start/End: Complemental strand, 31189671 - 31189519
Alignment:
Q  146 cagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactg-- 243  Q
    ||||||||||||| ||||| || || |||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||      
T  31189671 cagaatttatttgattaaccaagtggaaaa-tagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaatagtaatcatgcaattgga 31189573  T
Q  244 ataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
      |||||||||||||| | || |||||||| ||||||||||||||| |||||||    
T  31189572 caaaaatgtggtcacacatactatatatttggttaactgaaattttcgagagtg 31189519  T

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Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 43262708 - 43262859
Alignment:
Q  153 tatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttc---agcttctaaat-----------agtggtcacgc 238  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||   ||||| |||||           ||| |||||      
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttcttcagcttttaaatgttggaaaaatagtagtcacat 43262807  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||| |  ||||||||||||| ||||||||||||| ||||||||||||||||    
T  43262808 aactaaacaaatgtggtcacacagaccatatatttggttaactgaaattttt 43262859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 30704398 - 30704476
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccaca-tttttcagcttctaaat 227  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttttcagcttttaaat 30704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 15221662 - 15221738
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||||||||||||| ||| | | |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  15221662 aaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaactgaaatttttcagaatgata 15221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 7156182 - 7156105
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||| ||| || ||||||| |||||||||  |||||||||||| || |||||||||||||||||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaat 7156105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 30045940 - 30045885
Alignment:
Q  148 gaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgt 203  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  30045940 gaatttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttgcgt 30045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 13312696 - 13312769
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||| | |||||||||||||| | | ||||||| | |||||||||||||||| ||||||    
T  13312696 aaatagtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtg 13312769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 2477370 - 2477302
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcat 192  Q
    |||||| || |||| |||||| |||||||||||||||||||||| |  ||||||||||| |||||||||    
T  2477370 agttgcgtggccactatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 35922702 - 35922648
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||||| | |||||||||||  ||||||||||||||| |||||||||    
T  35922702 aaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgata 35922648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 35922830 - 35922906
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||| |||||| | ||||| ||||| || |||||||| |||| ||||||| |||||||| | |||||||    
T  35922830 aaatagtggtcatgcaacttaaaaaatatggtcccacagaccataaatttggttaacttaaatttttcaaagtgata 35922906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 15221673 - 15221618
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcac 186  Q
    ||||||| ||||||||||||||||||| ||||| ||| || ||||| |||||||||    
T  15221673 tgaccactattttttcagaatttatttagttaattaagtggaaaaagagtggtcac 15221618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 19621655 - 19621613
Alignment:
Q  54 tgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    |||||| || ||||||| |||||||||||||||||||||||||    
T  19621655 tgtacactcctttgtaccattctgaaaaatttcagttaaccaa 19621613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 42034857 - 42034927
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||| | |||||||| | ||| | |||||||||||  | ||||||||||||| ||||||    
T  42034857 tagtggtcacgcaactaaaaaaatgtgattacacataccatatatttgatcaactgaaattttttagagtg 42034927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 22169555 - 22169628
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||| ||||||||||||| | |||||||||||||| | | |||| |||| ||||||| ||| |||| ||||||    
T  22169555 aaataatggtcacgcaactaaaaaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtg 22169628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 33958991 - 33958918
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||| ||||||| ||| || | |||||||| | ||| ||||||||||||| ||||| |||||||||| ||||||    
T  33958991 aaattgtggtcatgcagctaaaaaaatgtgattacatagaccatatatttggttaagtgaaatttttcagagtg 33958918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 7156178 - 7156226
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatat 271  Q
    |||||||||||||| ||||| | ||||||||||||||  ||||||||||    
T  7156178 taaatagtggtcacacaactaaaaaaatgtggtcacacggaccatatat 7156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 36169410 - 36169351
Alignment:
Q  230 tggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||| | ||||||||||||||   ||||||||||| ||||||| ||||||||    
T  36169410 tggtcacgcaactaa-aaaatgtggtcacacctaccatatatttggttaactaaaattttt 36169351  T

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Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 9809162 - 9809024
Alignment:
Q  152 ttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatg 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  9809162 ttatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagtggtcacgcaactgaaaaaatg 9809063  T
Q  252 tggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||  |||||||||||||||||||||||| |||||    
T  9809062 tggtcacgcagaccatatatttagttaactgaatttttt 9809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 16583712 - 16583539
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| |||| || |||||  || ||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  16583712 agttgcgtgactactattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttct 16583613  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||||| ||||||||||||||   ||||||||||| ||||||||||||||| |||||||    
T  16583612 aaatagtggtcacgcaactgaaaaaatgtggtcacatcaaccatatatttggttaactgaaattttcgagagtg 16583539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 17633337 - 17633500
Alignment:
Q  127 tgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttc-agcttctaa 225  Q
    ||||||||||| |||| | || ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||     
T  17633337 tgcatgaccacaatttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttcaaacttctag 17633436  T
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    || |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  17633437 at-gtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggttaactgaaattttt 17633500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 290
Target Start/End: Complemental strand, 9810860 - 9810710
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 239  Q
    |||||||| || ||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  9810860 ttttttcataaattatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgca 9810761  T
Q  240 actgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||| |||||||||| ||  | |||||||||||| |||||||||||||||    
T  9810760 actgaaaaaatgtggtaacgcaaaccatatatttaattaactgaaattttt 9810710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 55666844 - 55666982
Alignment:
Q  149 aatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaa 248  Q
    |||||||||| |||||||| || ||||||||||||||||  |||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||| |||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccacgtttttcagcttataaataatggtcacgcaactga-aaa 55666941  T
Q  249 atgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  55666942 atgtggtcacacagaccatatatttagttaactgaaatttt 55666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 1966826 - 1966961
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | |||| |||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1966826 agttgcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgcattt-agttgcgtgaccacatttttcagcttct 1966924  T
Q  224 aaatagtggtcacgcaact-gataaaatgtggtcaca 259  Q
    |||||||||||||||||||  | ||||||||||||||    
T  1966925 aaatagtggtcacgcaactaaaaaaaatgtggtcaca 1966961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 149 - 300
Target Start/End: Original strand, 8740809 - 8740960
Alignment:
Q  149 aatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactg-ataa 247  Q
    ||||||||| ||||||||| |  |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| | ||    
T  8740809 aatttatttagttaactaagtagaaaaatagtggtcacgcgcattttagta-cgtgaccacatttttcagcttctaaatagtgatcacgcaactgaaaaa 8740907  T
Q  248 aatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    ||| |||||||| ||| |||| ||||  |||||||||| ||||||||||||||    
T  8740908 aatatggtcacacagatcatacatttgattaactgaaaattttgagagtgata 8740960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 33179759 - 33179917
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | ||||| |||||||||||| |||||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||  |||||||||||    
T  33179759 tgaccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagt 33179858  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||||||| |||| || || |||| ||| | ||||||||||||||||| | |||||||    
T  33179859 ggtcacgcagctgaaaagatatggtaacacataccatatatttagttaattaaaatttt 33179917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 297
Target Start/End: Complemental strand, 19596891 - 19596723
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| || |||||||||||||||||||||||||| ||   ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  19596891 tgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaaataat 19596792  T
Q  231 ggtcacgcaactg--ataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||| || || |||  | |||||||||||||   |||||||||||| || ||| || |||||| ||||||    
T  19596791 ggttacacagctgaaaaaaaatgtggtcacgctgaccatatatttggtcaacagagatttttcagagtg 19596723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 35544438 - 35544578
Alignment:
Q  149 aatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaa 248  Q
    ||||||||| ||||| ||| || |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||  |||| || |||    
T  35544438 aatttatttagttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaatagtggtcatacaacggaaaaa 35544536  T
Q  249 atgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||| ||||| | |||||||||||  |||||||||||||||    
T  35544537 atgtgatcacacataccatatatttgattaactgaaattttt 35544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 33249616 - 33249729
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | ||||||| |||||||||| |||||||  || ||||||||||||||| |||||||||  ||||||||||||||||||| ||||||||||||    
T  33249616 tgaccactactttttcaaaatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaatagt 33249715  T
Q  231 ggtcacgcaactga 244  Q
    ||||||||||||||    
T  33249716 ggtcacgcaactga 33249729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 289
Target Start/End: Complemental strand, 42908675 - 42908520
Alignment:
Q  133 accaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccaca-tttttcagcttctaaatagtg 231  Q
    ||||| |||||| ||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||    
T  42908675 accactatttttccagaatttatttggttaactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaat-gtg 42908577  T
Q  232 gtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||| ||||||| ||||| |||||| | ||||||||||||| ||| ||| |||||||    
T  42908576 gtcacacaactga-aaaatatggtcaaacagaccatatatttggttcactaaaatttt 42908520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 2433811 - 2433693
Alignment:
Q  140 ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 239  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||| |||||||  || | |||||||||||||||||||||||||||||||||  ||    
T  2433811 ttttttcataatttatttggttaacaaagtgaaaaaatagtggtcacgtgcatttttttt-catgaccacatttttcagcttctaaatagtggtcaaaca 2433713  T
Q  240 actgataaaatgtggtcaca 259  Q
    ||||| |||||||| |||||    
T  2433712 actgaaaaaatgtgatcaca 2433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 24669274 - 24669123
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct-----------aaatagtggtcacgc 238  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||||| || ||||           |||||||||||||||    
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatatttttgagtttctaaatgctgaaaaaatagtggtcacgc 24669175  T
Q  239 aactgataaaatgtggtcacaaagaccat-atatttagttaactgaaatttt 289  Q
    |||||| |||||||||||||| | ||||| |||||| | ||||| |||||||    
T  24669174 aactgaaaaaatgtggtcacacataccataatatttggctaacttaaatttt 24669123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 14351178 - 14351007
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| |||||  || ||||||||||||||||||| || |||||||||||||| |  |||||||||||||||| ||||| ||| ||||||     
T  14351178 agttgcgtgaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtcatggacattttagttgcgtgatcacatcttttagcttca 14351079  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||| | |||| ||  ||||||||  || | | |   ||||||| ||||||||||||||| |||||||    
T  14351078 aaatagtggttatgcaattg--aaaatgtgaccatacaaattgtatatttggttaactgaaattttcgagagtg 14351007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 24669270 - 24669344
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||  |||||| |||||||| ||||||    
T  24669270 taaatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtg 24669344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 20874880 - 20874814
Alignment:
Q  193 tttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcaca 259  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  20874880 tttagttgcgttaccacatttttcagcttctaaaaagtgatcacgcaactgaaaaaatatggtcaca 20874814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 1966841 - 1966780
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||    
T  1966841 tagtggtcacgcaactaa-aaaatgtggtcacacagaccatatatttggttaactgaaatttt 1966780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 14351160 - 14351233
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||||||   ||||| |||||||| | ||||||||||| ||||||| || ||||||||||||    
T  14351160 aaatagtggtcacgcaactagaaaaatatggtcacacaaaccatatatttggttaactaaattttttgagagtg 14351233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 1966978 - 1967016
Alignment:
Q  211 tttttcagcttctaaatagtggtcacgcaactgataaaa 249  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  1966978 tttttcagcttctaaatagtggtcacgcaactgaaaaaa 1967016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 42908666 - 42908738
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||| || ||||| | |||||||||||||| | ||||||||||| ||||||| |||||||| ||||||    
T  42908666 aaatagtggtgactcaactaa-aaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtg 42908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 17633331 - 17633287
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||    
T  17633331 aaaatgtggtcacacagaccatatatttggttaactaaaattttt 17633287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 19746939 - 19746991
Alignment:
Q  248 aatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||| |||||    
T  19746939 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgata 19746991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 19792867 - 19792815
Alignment:
Q  248 aatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||| |||||    
T  19792867 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgata 19792815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 9810866 - 9810918
Alignment:
Q  230 tggtcacgcaactgataaaa-tgtggtcacaaagaccatatatttagttaact 281  Q
    ||||||||||||| | |||| |||||||||| ||||||||||||| |||||||    
T  9810866 tggtcacgcaactaaaaaaaatgtggtcacacagaccatatatttggttaact 9810918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 19596882 - 19596946
Alignment:
Q  226 atagtggtcacgcaactgataaaa-tgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||||||| || | |||| ||||||||||   ||||||||||| |||||||||||||||    
T  19596882 atagtggtcacgcagctaaaaaaaatgtggtcacacgtaccatatatttggttaactgaaatttt 19596946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 25007625 - 25007665
Alignment:
Q  254 gtcacaaagaccatatatttagttaactgaaatttttgaga 294  Q
    |||||| ||||||||||||| ||||||||||||||| ||||    
T  25007625 gtcacatagaccatatatttggttaactgaaattttcgaga 25007665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 202 - 375
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | ||||||| || |||||||| ||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  202 agttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttct 301  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||||| ||||||||||| |||| ||||||    
T  302 aaatagtggtcacgcaactgaaaaagtgtggccacacagaccatatatttggttaactgaaaattttcagagtg 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 217 - 154
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||||||| | | |||||| ||||| || |||||||||| ||||||||||||||||    
T  217 tagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaactgaaattttt 154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 29677078 - 29677198
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29677078 agttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttct 29677177  T
Q  224 aaatagtggtcacgcaactga 244  Q
    ||||||||||||| |||||||    
T  29677178 aaatagtggtcactcaactga 29677198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 124 - 289
Target Start/End: Complemental strand, 34490304 - 34490140
Alignment:
Q  124 agttgcatgaccacca-ttttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttc 222  Q
    |||||| ||||||| | |||||||||||||||||||||||||||| |  |||||||||||||| |||||||||| |||| ||||||||||||| ||||||    
T  34490304 agttgcgtgaccactagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattttttagcttc 34490206  T
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||||||||||  ||||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  34490205 taaatagtggtcatacaactgaaaaaatgt-gtcacacagaccatatatttagttaactgaaatttt 34490140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 25238575 - 25238436
Alignment:
Q  141 tttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaa 240  Q
    ||||||||||||||||||||||||||| || |||||||||||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  25238575 tttttcagaatttatttggttaactaagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagtggtcacgcaa 25238477  T
Q  241 ctgataaaatgtggtcacaaagaccatatatttagttaact 281  Q
    |||| ||||| || ||| | |||||||||||||||||||||    
T  25238476 ctgaaaaaatttgatcatatagaccatatatttagttaact 25238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 289
Target Start/End: Complemental strand, 34364332 - 34364184
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    |||||| |||||||| ||||||||||||| ||||||||| |||||||||  ||||||||||| |||||||||| |||||||||||||||| ||| |||||    
T  34364332 atttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata-tggccacgc 34364234  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||||| ||||| |||||||| ||||||||||||||||||||| |||||||    
T  34364233 aactga-aaaatatggtcacacagaccatatatttagttaacttaaatttt 34364184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 29167803 - 29167931
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | |||||| |||||||||||||||||||| || |||||||||||||| |||||||||| ||||||||||| |||||| |||||||    
T  29167803 agttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattttttagcttct 29167901  T
Q  224 aaatagtggtcacgcaactgataaaatgtg 253  Q
    ||||||||||||||||||||| ||||||||    
T  29167902 aaatagtggtcacgcaactgaaaaaatgtg 29167931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 42604319 - 42604199
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||  |||||| | |||| ||||||||||||||||| | ||    
T  42604319 attttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagcttctaaatagtggtgatgc 42604220  T
Q  239 aactgataaaatgtggtcaca 259  Q
    |||||| ||||||||||||||    
T  42604219 aactgaaaaaatgtggtcaca 42604199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 38952023 - 38951847
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccaca--tttttcagctt 221  Q
    |||||| ||||||| |||| | || ||||||||||||||||||| |  ||||||||||||||  ||||||||||||||||||| | |  |||||||| ||    
T  38952023 agttgcttgaccactatttctccaaaatttatttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagttt 38951924  T
Q  222 ctaaatagtggtcacgcaactg-ataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||||| ||| | ||||||||||  || ||||||||||||| ||||||| ||||||| |||||||    
T  38951923 ctaaatagtggtcacgcagctgaaaaaaatgtggtttcatagaccatatatttggttaacttaaattttcgagagtg 38951847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 300
Target Start/End: Original strand, 517421 - 517581
Alignment:
Q  140 ttttttcagaattt-atttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    |||||||||||||| |||||||||||||| | |||||||||| |||| |  |||||||||||||||| || |||||| | ||||||||||||||| ||||    
T  517421 ttttttcagaattttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgc 517520  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    || ||| ||||||||||  || | | ||||||||| ||||||| ||||||||||||||||||    
T  517521 aattga-aaaatgtggttgcacatatcatatatttggttaacttaaatttttgagagtgata 517581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 5831648 - 5831482
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct 223  Q
    |||||| ||||||| | |||| |||||||||||||||||||||| || |||||| ||||| |  |||||||||||| || ||||| |||||| | |||||    
T  5831648 agttgcgtgaccactaattttccagaatttatttggttaactaagtggaaaaattgtggtaatacgcattttagttacgggaccatattttttaacttct 5831549  T
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||| |||||  | ||||| || ||||| | ||||||| ||||||||||| ||||||||    
T  5831548 aaatagtggtcatgcaacaaacaaaatatgatcacacataccatatctttagttaactaaaattttt 5831482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 9929834 - 9929936
Alignment:
Q  187 gcgcattttagttgcgtgaccacat-ttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaa 285  Q
    ||||||||||||||||||||||||| ||||| |     ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||    
T  9929834 gcgcattttagttgcgtgaccacatattttctgaaa--aaatagtggtcacgcaaatgaaaaaatgtggtcacacagaccatatatttagttaattgaaa 9929931  T
Q  286 ttttt 290  Q
    |||||    
T  9929932 ttttt 9929936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 2996101 - 2996025
Alignment:
Q  151 tttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||||||  | |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttcagcttctaaat 2996025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 9468199 - 9468064
Alignment:
Q  150 atttatttggttaactaaatga-aaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaa 248  Q
    |||||||||||||||||| ||  ||||||||| |||||   ||||||||||| |||| |||||||| |||||| |||||| ||||||  ||||||| |||    
T  9468199 atttatttggttaactaagtggcaaaaatagtagtcacatacattttagttgtgtgatcacattttacagcttttaaata-tggtcagacaactgaaaaa 9468101  T
Q  249 atgtggtcacaaagaccatatatttagttaactgaaa 285  Q
    || |||||||| | ||||||||||| |||||||||||    
T  9468100 atatggtcacacataccatatatttggttaactgaaa 9468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 34490289 - 34490359
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||| || ||||||||||||| ||||||    
T  34490289 tagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtg 34490359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 5831633 - 5831706
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||||||| | ||||| |||||||| ||||||||||||| ||||| |||||||||| |||||||||    
T  5831633 tagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgata 5831706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 5855201 - 5855275
Alignment:
Q  223 taaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||||||||| |  ||||||||||||| | ||||||||||| ||||||| |||||||| ||||||    
T  5855201 taaatagtggtcacgcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtg 5855275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 38244801 - 38244863
Alignment:
Q  226 atagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattt 288  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| ||||||    
T  38244801 atagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggctaacttaaattt 38244863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 2570024 - 2569960
Alignment:
Q  124 agttgcatgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgc 188  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||| || |||||||||||||||||    
T  2570024 agttgcgtgaccactatttttctagaatttatttggttaactaagtggaaaaatagtggtcacgc 2569960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 38952005 - 38952081
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtgata 300  Q
    |||||||||||| |||||| | ||||| |||||||| | |||||| |||| |||||||||||||||| |||||||||    
T  38952005 aaatagtggtcaagcaactaaaaaaatatggtcacatataccatacattttgttaactgaaatttttcagagtgata 38952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 29167818 - 29167756
Alignment:
Q  227 tagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||| |||||| | |||||||||||||| | ||||||||||||||||||||||||||||    
T  29167818 tagtggtcaggcaactaa-aaaatgtggtcacacaaaccatatatttagttaactgaaattttt 29167756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 5855205 - 5855056
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttct-----------aaatagtggtcacgc 238  Q
    |||||||||||||| |||||| ||||||||  ||||  || |||||||||| |||||||||| ||| ||||| |           |||| |||||||| |    
T  5855205 atttatttggttaattaaatggaaaaatagacgtca--cgtattttagttgtgtgaccacatattttagcttttaaatgttggaaaaattgtggtcacac 5855108  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||| || ||||||||||| ||||||||||||| |||| |||||||||||    
T  5855107 aactgaaaatatgtggtcacacagaccatatatttggttagctgaaattttt 5855056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 29677096 - 29677031
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    |||||||||||| |||||| | |||||||||||||| || |||||||||| ||||||| ||||||||    
T  29677096 aaatagtggtcatgcaactaa-aaaatgtggtcacacaggccatatatttggttaactaaaattttt 29677031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 13350999 - 13350926
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||| | || |||||||| |||| ||| ||||| | ||||||||||| ||||||||||||||| |||||||    
T  13350999 aaatagtagccatgcaactgaaaaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtg 13350926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 24708123 - 24708074
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    |||||||||||||||| || | |||||||||||||| |||||||||||||    
T  24708123 aaatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 24708074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 38245012 - 38245069
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaact 281  Q
    |||||||||||||||| |||| ||||| |||| ||| ||||||||||||||| |||||    
T  38245012 aaatagtggtcacgcagctgaaaaaatctggttacatagaccatatatttagctaact 38245069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 13351008 - 13351056
Alignment:
Q  249 atgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    ||||||||||||||||||||||||| ||||| | |||||||| ||||||    
T  13351008 atgtggtcacaaagaccatatatttggttaagttaaatttttcagagtg 13351056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 17227548 - 17227500
Alignment:
Q  225 aatagtggtcacgcaactgataaaatgtggtcacaaagaccatatattt 273  Q
    ||||||||||||||| || | |||||||||||||| |||||||||||||    
T  17227548 aatagtggtcacgcaccttaaaaaatgtggtcacacagaccatatattt 17227500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 9929739 - 9929778
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaata 178  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  9929739 attttttcaaaatttatttggttaactaaatggaaaaata 9929778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 25238596 - 25238647
Alignment:
Q  246 aaaatgtggtcacaaagaccatatatttagttaactgaaatttttgagagtg 297  Q
    |||||||||||||| | |||||||||||  ||||||||||||||| ||||||    
T  25238596 aaaatgtggtcacagaaaccatatatttgattaactgaaatttttcagagtg 25238647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 2569974 - 2569906
Alignment:
Q  224 aaatagtggtcacgcaactgataaaa--tgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||||||| ||| ||||  ||| |||||| ||||||||||||| |||||| |||| ||||    
T  2569974 aaatagtggtcacgcaattgaaaaaaaatgtagtcacacagaccatatatttggttaaccgaaaatttt 2569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 2570006 - 2570071
Alignment:
Q  224 aaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||||||||||||||||| | ||||| |||| ||| | |||||||| || ||||||| |||||||    
T  2570006 aaatagtggtcacgcaactcaaaaaatatggtaacacaaaccatatacttggttaacttaaatttt 2570071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 5855322 - 5855250
Alignment:
Q  21 aagagcaatgataggtaggcacccttaatgatatgtacattcatttgtactattctgaaaaatttcagttaaccaa 96  Q
    |||||||||||||||||| ||||  ||||   ||||||| || ||||||| | |||||||||||| ||||||||||    
T  5855322 aagagcaatgataggtagacaccactaat---atgtacactcttttgtaccactctgaaaaatttaagttaaccaa 5855250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 24021 - 24191
Alignment:
Q  131 tgaccaccattttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 230  Q
    ||||||| | |||||||||||||||||||| || ||| || |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  24021 tgaccactagtttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta-atgcgtaaccacattttttagcttctaaatagt 24119  T
Q  231 ggtcacgcaactgataaaatgtggtcacaaagac--catatatttagttaactgaaatttttgagagtgata 300  Q
    ||||| |||||||| ||||||| |||||| ||||  ||||||||  ||| |||||||||||| ||| |||||    
T  24120 ggtcatgcaactgaaaaaatgtagtcacatagacgacatatattcggttcactgaaatttttcagattgata 24191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 10623 - 10773
Alignment:
Q  139 attttttcagaatttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgc 238  Q
    ||||||| ||||||||||||||||||||| || ||||||| |||||||| | ||||||||||||||||||||||||| |  || ||||||||||||| ||    
T  10623 attttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatgc 10722  T
Q  239 aactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    |||| | ||||| | |||||  ||||||||||||| ||||| |||||||||    
T  10723 aacttaaaaaatatagtcacctagaccatatatttggttaattgaaatttt 10773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 21549 - 21638
Alignment:
Q  200 gcgtgaccacatttttcagcttctaaatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaatttt 289  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||  ||||||||| |||||    
T  21549 gcgtgaccacatttttcagcttctatatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatattcggttaactgagatttt 21638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 87112 - 87035
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||||||| |  |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttcagtttctaaat 87035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 112235 - 112158
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||| ||||||||| || |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaat 112158  T

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Target: scaffold0291 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 5947 - 5870
Alignment:
Q  150 atttatttggttaactaaatgaaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaat 227  Q
    |||||||||||||| ||| || |||||||||||||||||| ||||||||||||  |||||| |||||||||| |||||    
T  5947 atttatttggttaattaagtgcaaaaatagtggtcacgcgtattttagttgcgacaccacacttttcagcttttaaat 5870  T

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Target: scaffold0213 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 24738 - 24798
Alignment:
Q  230 tggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattttt 290  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| | |||||||| |||||    
T  24738 tggtcacgcaacttataaaatgtggtcacatagaccatatatttggctaactgaatttttt 24798  T

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Target: scaffold0213; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 24932 - 24995
Alignment:
Q  225 aatagtggtcacgcaactgataaaatgtggtcacaaagaccatatatttagttaactgaaattt 288  Q
    |||||||||||| ||||||| || ||||||||||| |||| |||||||| | ||||||||||||    
T  24932 aatagtggtcacacaactgaaaacatgtggtcacacagactatatatttggctaactgaaattt 24995  T

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