View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_110 (Length: 318)

Name: NF15941_low_110
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_110
NF15941_low_110
[»] chr8 (5 HSPs)
chr8 (15-302)||(8273816-8274112)
chr8 (208-296)||(9936382-9936470)
chr8 (217-276)||(42941246-42941305)
chr8 (217-290)||(37269863-37269936)
chr8 (217-290)||(36404084-36404157)
[»] chr1 (1 HSPs)
chr1 (208-296)||(32774138-32774226)
[»] chr6 (4 HSPs)
chr6 (208-302)||(1034279-1034373)
chr6 (224-292)||(2920963-2921031)
chr6 (224-303)||(18246573-18246652)
chr6 (214-275)||(10232769-10232830)
[»] chr2 (3 HSPs)
chr2 (212-296)||(11272516-11272600)
chr2 (218-296)||(1479466-1479544)
chr2 (263-294)||(13016919-13016950)
[»] chr3 (3 HSPs)
chr3 (208-275)||(53553661-53553728)
chr3 (224-303)||(1259320-1259399)
chr3 (224-303)||(37242608-37242687)
[»] chr7 (2 HSPs)
chr7 (224-303)||(31234772-31234851)
chr7 (208-251)||(42460112-42460155)
[»] chr5 (1 HSPs)
chr5 (209-296)||(36989015-36989102)
[»] chr4 (1 HSPs)
chr4 (224-303)||(16989585-16989664)
[»] scaffold0495 (1 HSPs)
scaffold0495 (214-275)||(9492-9553)
[»] scaffold0760 (1 HSPs)
scaffold0760 (217-290)||(1742-1815)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 8274112 - 8273816
Alignment:
Q  15 aaagcaaacaagaacaataggctagtgcagaaaataagcacaagtacgggaagcatgaaacatgaaa---------acatgaaacaaatcctaaaaacaa 105  Q
    ||||| ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| |||||||         ||||||||||||||| ||||||||    
T  8274112 aaagctaacaagaacaataagctagtgcagaaaataagcacagctacaggaagcatgaagcatgaaacatgaaaaaacatgaaacaaatcccaaaaacaa 8274013  T
Q  106 atgtacattcccataagccgagccatcaataaaaaatctgcaccgacagctgaggtatccgagcaactcaaacacctatagcagattcaaaaaacaacgc 205  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||    
T  8274012 atgtacattcccataagccaagccatcaataaaaaacctgcaccgacagctgaggtatccgagcaactcaaacacctatagcagatccaaaaaacagtgc 8273913  T
Q  206 cgtttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaat 302  Q
    || |||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||||||||||||||||||||    
T  8273912 cgcttagacactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaat 8273816  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 9936470 - 9936382
Alignment:
Q  208 tttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgc 296  Q
    |||||||||| |||| | |||||| ||||||||||||||||||| ||  |||| |||| ||| |||||| |||| |||||||| |||||    
T  9936470 tttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaagacaccgc 9936382  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 42941305 - 42941246
Alignment:
Q  217 tctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaac 276  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| |||| ||||||||||    
T  42941305 tctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaac 42941246  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 37269863 - 37269936
Alignment:
Q  217 tctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaaga 290  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| || | ||||||||||  ||||| ||||||    
T  37269863 tctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 37269936  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 36404084 - 36404157
Alignment:
Q  217 tctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaaga 290  Q
    |||||| |||||||| ||||||| || |||||||| ||| |||| || | ||||||||||| ||||| ||||||    
T  36404084 tctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaaga 36404157  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 32774138 - 32774226
Alignment:
Q  208 tttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgc 296  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||||    
T  32774138 tttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 1034373 - 1034279
Alignment:
Q  208 tttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaat 302  Q
    |||||||||||| || |||||||| ||||||||||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||| |||||    
T  1034373 tttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaagaaaccgctttaat 1034279  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 2920963 - 2921031
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaa 292  Q
    |||||||  ||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||    
T  2920963 gattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaagaaa 2921031  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 18246573 - 18246652
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaatt 303  Q
    |||||||  |||||||||| |||||||||||| |||| || || ||||||||| ||||||||||||||| ||| ||||||    
T  18246573 gattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatt 18246652  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 10232830 - 10232769
Alignment:
Q  214 cactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaa 275  Q
    |||||| || |||||||||||||||||||||||||||||||| |||| || | |||||||||    
T  10232830 cactctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa 10232769  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 11272600 - 11272516
Alignment:
Q  212 ggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgc 296  Q
    ||||||||||| || ||||| | |||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  11272600 ggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgc 11272516  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 1479466 - 1479544
Alignment:
Q  218 ctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgc 296  Q
    ||||| |||||||| ||||||||||||||||||| ||  |||| ||||||||||||| ||||||| |||| ||||||||    
T  1479466 ctctaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaatcccacgaaaccgc 1479544  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 13016919 - 13016950
Alignment:
Q  263 ttaatctactcaacgtccaaacccaagaaacc 294  Q
    ||||||||||||||||||||||||||||||||    
T  13016919 ttaatctactcaacgtccaaacccaagaaacc 13016950  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 53553661 - 53553728
Alignment:
Q  208 tttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaa 275  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  53553661 tttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctactcaa 53553728  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 1259320 - 1259399
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaatt 303  Q
    |||||||  |||||||||| |||||||||||| |||| || || ||||||||| ||||||||||||||| ||| ||||||    
T  1259320 gattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatt 1259399  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 37242608 - 37242687
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaatt 303  Q
    |||||||  |||||||||| |||||||||||| |||| || || ||||||||| ||||||||||||||| ||| ||||||    
T  37242608 gattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatt 37242687  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 31234772 - 31234851
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaatt 303  Q
    |||||||| |||||||||| |||||||||||| |||| || || ||||||||| ||||||||||||||| ||| ||||||    
T  31234772 gattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatt 31234851  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 42460112 - 42460155
Alignment:
Q  208 tttaggcactctctatgattccaaatccactcataaaagaggaa 251  Q
    ||||||||||||||| |||||||| || ||||||||||||||||    
T  42460112 tttaggcactctctaggattccaagtctactcataaaagaggaa 42460155  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 36989102 - 36989015
Alignment:
Q  209 ttaggcactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgc 296  Q
    |||| ||||||||| |||||||  |||||| ||| |||||||||||| |||| || || |||||||||  ||||||||||||||||||    
T  36989102 ttagacactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgc 36989015  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 16989664 - 16989585
Alignment:
Q  224 gattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaagaaaccgccttaatt 303  Q
    |||||||  |||||||||| |||||||||||| |||| || || ||||||||| ||||||||||||||| ||| ||||||    
T  16989664 gattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatt 16989585  T

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Target: scaffold0495 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 9553 - 9492
Alignment:
Q  214 cactctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaa 275  Q
    |||||| || |||||||||||||||||||||||||||||||| |||| || | |||||||||    
T  9553 cactctttaagattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa 9492  T

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Target: scaffold0760 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 1742 - 1815
Alignment:
Q  217 tctctatgattccaaatccactcataaaagaggaaagaaactatttttaatctactcaacgtccaaacccaaga 290  Q
    |||||| |||||||| ||||||||||||||||||| ||| |||| || | ||||||||||  ||||| ||||||    
T  1742 tctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 1815  T

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