View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15941_low_112 (Length: 316)
Name: NF15941_low_112
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15941_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 25400277 - 25400463
Alignment:
| Q |
1 |
taggtgcggtaacgtacatacagttcccaagtgtccctcttgcgtgtcaaaatcctattgattttcatcctctgaaaa-gtcaacatttttcattggccc |
99 |
Q |
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| T |
25400277 |
taggtgcggtaacgtacatacagttcccaagtgtccctcttgcgtgtcaaaatcctattgattttcatcatctgaaaaagtcaacatttttcattggccc |
25400376 |
T |
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| Q |
100 |
aatactttcttgccacgtgttctaccagatggatcctatttgtacccgaaatataacccacccgatccaataccggtggtccaccag |
186 |
Q |
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| T |
25400377 |
aatactttcttgccacgtgttctaccagatggatcctatttgtacccgaaatataacccacccgatccaatacgggtggtgcaccag |
25400463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 25400498 - 25400592
Alignment:
| Q |
220 |
tgttcaagtttttcttcatctcttaccatggcaactacgttgttccgcactattcgtagagcttccactgtattcaaatcctcctatgctactac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25400498 |
tgttcaagtttttcttcatctcttaccatggcaactacgttgttccgcactattcgtagagcttccactgtattcaaatcctcgtatgctgctac |
25400592 |
T |
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