View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15941_low_116 (Length: 311)

Name: NF15941_low_116
Description: NF15941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15941_low_116
NF15941_low_116
[»] chr4 (1 HSPs)
chr4 (16-311)||(43506349-43506644)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 43506349 - 43506644
Alignment:
Q  16 caacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgcatctcctgcaatatcctcataacacgttcttcacattccttatct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  43506349 caacatcgtcaaccgttgcccggaaagatcaacacgctgaccatctttctcacgtacctcctgcaatatcctcataacacgttcttcacattccttatct 43506448  T
Q  116 tcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatccttaagtagcttctcataagcttcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43506449 tcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatccttaagtagcttctcataagcttcat 43506548  T
Q  216 gcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctctttccgtaacatgaattatcc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43506549 gcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctctttccgtaacatgaattatcc 43506644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University